Results 21 - 40 of 678 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6366 | 3' | -61.6 | NC_001847.1 | + | 111063 | 0.76 | 0.188874 |
Target: 5'- gUGGUCcucUCGCUGCCGCGGGCcugggcccgGCUGCg -3' miRNA: 3'- gACCAGc--AGCGGCGGUGCCUG---------CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 31871 | 0.76 | 0.190691 |
Target: 5'- -cGG-CGUUGCUGCCggcggagcccgucgcGCGGAUGCCGCc -3' miRNA: 3'- gaCCaGCAGCGGCGG---------------UGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 104281 | 0.76 | 0.198115 |
Target: 5'- ----aCGUUGCCGCCGCGGcagaGCCGCa -3' miRNA: 3'- gaccaGCAGCGGCGGUGCCug--CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 1468 | 0.76 | 0.198115 |
Target: 5'- ----aCGUUGCCGCCGCGGcagaGCCGCa -3' miRNA: 3'- gaccaGCAGCGGCGGUGCCug--CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 34118 | 0.76 | 0.202881 |
Target: 5'- -cGGagccugCGgCGCCuGCCGCGGugGCCGCc -3' miRNA: 3'- gaCCa-----GCaGCGG-CGGUGCCugCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 53197 | 0.76 | 0.202881 |
Target: 5'- gUGG-CG-CGCCGCCACcucGACGCCGUc -3' miRNA: 3'- gACCaGCaGCGGCGGUGc--CUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 86639 | 0.75 | 0.207747 |
Target: 5'- gUGGgCGggccgCGCCGCCcCGGagcGCGCCGCg -3' miRNA: 3'- gACCaGCa----GCGGCGGuGCC---UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 97923 | 0.75 | 0.207747 |
Target: 5'- -gGGUCGUCcgcGCCGCCGCcaagcggcaccGGGCGCCucGCa -3' miRNA: 3'- gaCCAGCAG---CGGCGGUG-----------CCUGCGG--CG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 93627 | 0.75 | 0.212713 |
Target: 5'- -cGGcCGgCGCgGCCGCGGACGuCUGCa -3' miRNA: 3'- gaCCaGCaGCGgCGGUGCCUGC-GGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 38033 | 0.75 | 0.212713 |
Target: 5'- gUGGgcgCG-CGCCGCCGCGc-CGCCGCu -3' miRNA: 3'- gACCa--GCaGCGGCGGUGCcuGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 89866 | 0.75 | 0.212713 |
Target: 5'- -aGGcCGgcUCGCCGCgGCGGGCuucGCCGCg -3' miRNA: 3'- gaCCaGC--AGCGGCGgUGCCUG---CGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 85080 | 0.75 | 0.212713 |
Target: 5'- -gGGUcCG-CGCCGCgCGCGGAC-CCGCg -3' miRNA: 3'- gaCCA-GCaGCGGCG-GUGCCUGcGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 50148 | 0.75 | 0.217781 |
Target: 5'- -cGGUCGUCGCCGgCgugACGGucuucugccuCGCCGCc -3' miRNA: 3'- gaCCAGCAGCGGCgG---UGCCu---------GCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 72989 | 0.75 | 0.217781 |
Target: 5'- -cGG-CGgccuaCGCCGCCGCGGccaugcgcACGCCGCu -3' miRNA: 3'- gaCCaGCa----GCGGCGGUGCC--------UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 80444 | 0.75 | 0.217781 |
Target: 5'- -cGcGUCGUCcuCC-CCGCGGGCGCCGCc -3' miRNA: 3'- gaC-CAGCAGc-GGcGGUGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 38091 | 0.75 | 0.217781 |
Target: 5'- -cGGUCGgggaaaGCaGCC-CGGACGCCGCu -3' miRNA: 3'- gaCCAGCag----CGgCGGuGCCUGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 103907 | 0.75 | 0.222952 |
Target: 5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3' miRNA: 3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 1094 | 0.75 | 0.222952 |
Target: 5'- -cGGgCGcCGCgGCCGCGGgcgGCGCCGCc -3' miRNA: 3'- gaCCaGCaGCGgCGGUGCC---UGCGGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 45507 | 0.75 | 0.222952 |
Target: 5'- -cGGggCGggCGCCGCCGcCGGGCGgCGCg -3' miRNA: 3'- gaCCa-GCa-GCGGCGGU-GCCUGCgGCG- -5' |
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6366 | 3' | -61.6 | NC_001847.1 | + | 31414 | 0.75 | 0.228227 |
Target: 5'- gUGGacgcCGUCuggcaGCCGCgGCGGACGUCGCu -3' miRNA: 3'- gACCa---GCAG-----CGGCGgUGCCUGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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