miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 5' -49.6 NC_001847.1 + 116224 1.11 0.007219
Target:  5'- uGGAAGACACCUGCCACUACAAGAUCUg -3'
miRNA:   3'- -CCUUCUGUGGACGGUGAUGUUCUAGA- -5'
6366 5' -49.6 NC_001847.1 + 8078 0.86 0.261449
Target:  5'- aGGggGGCACC-GCCGCgGCGAGAUCg -3'
miRNA:   3'- -CCuuCUGUGGaCGGUGaUGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 76397 0.76 0.711409
Target:  5'- gGGggGGCGCCggggGCCGCgGCGGGggCa -3'
miRNA:   3'- -CCuuCUGUGGa---CGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 11337 0.75 0.792423
Target:  5'- aGGAcGGCGCCUGCCGCUGCc------ -3'
miRNA:   3'- -CCUuCUGUGGACGGUGAUGuucuaga -5'
6366 5' -49.6 NC_001847.1 + 78398 0.74 0.811276
Target:  5'- cGAGGAC-CCcGCCGCUGCGGGcgCg -3'
miRNA:   3'- cCUUCUGuGGaCGGUGAUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 28953 0.73 0.838171
Target:  5'- uGGAGACGCUgGCCGCgGCGGGGUUUa -3'
miRNA:   3'- cCUUCUGUGGaCGGUGaUGUUCUAGA- -5'
6366 5' -49.6 NC_001847.1 + 32567 0.73 0.871069
Target:  5'- aGGAuGGCGCCgcccGCCGCUGCcccagagcuGGGAUCg -3'
miRNA:   3'- -CCUuCUGUGGa---CGGUGAUG---------UUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 27406 0.73 0.871069
Target:  5'- gGGggGGCGCUguUGCCGCcgGCGcGGUCg -3'
miRNA:   3'- -CCuuCUGUGG--ACGGUGa-UGUuCUAGa -5'
6366 5' -49.6 NC_001847.1 + 130219 0.73 0.871069
Target:  5'- gGGggGGCGCUguUGCCGCcgGCGcGGUCg -3'
miRNA:   3'- -CCuuCUGUGG--ACGGUGa-UGUuCUAGa -5'
6366 5' -49.6 NC_001847.1 + 17816 0.72 0.900152
Target:  5'- gGGAGGGCGCCaUGCCAgUGC-GGcgCa -3'
miRNA:   3'- -CCUUCUGUGG-ACGGUgAUGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 53423 0.71 0.919262
Target:  5'- uGGAGGGCGCgUGCCGCUuccACcGGcgCg -3'
miRNA:   3'- -CCUUCUGUGgACGGUGA---UGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 73765 0.71 0.925102
Target:  5'- cGGgcGGCGgCgcggGCCGCUACGAGcgCg -3'
miRNA:   3'- -CCuuCUGUgGa---CGGUGAUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 52548 0.71 0.925102
Target:  5'- cGGAGGGCGCg-GCCgacauGCUGCGAGAgCUg -3'
miRNA:   3'- -CCUUCUGUGgaCGG-----UGAUGUUCUaGA- -5'
6366 5' -49.6 NC_001847.1 + 72327 0.71 0.925102
Target:  5'- uGGAcgcGGACGCgCUGCUgguGCUGCAGGAa-- -3'
miRNA:   3'- -CCU---UCUGUG-GACGG---UGAUGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 12906 0.71 0.930675
Target:  5'- cGGAAGcgcGCGCCgUGCCGCcGCGGGggCg -3'
miRNA:   3'- -CCUUC---UGUGG-ACGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 48843 0.7 0.941021
Target:  5'- cGggGGCGCCUcgGCCGCgcggcGCGAGGUa- -3'
miRNA:   3'- cCuuCUGUGGA--CGGUGa----UGUUCUAga -5'
6366 5' -49.6 NC_001847.1 + 125202 0.7 0.945798
Target:  5'- aGAAGGCGCCcggGCCGCgGCGAGcgUg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 22389 0.7 0.945798
Target:  5'- aGAAGGCGCCcggGCCGCgGCGAGcgUg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 34118 0.7 0.948538
Target:  5'- cGGAGccugcGGCGCCUGCCGCgguggccgccgcgGCGAGcgCg -3'
miRNA:   3'- -CCUU-----CUGUGGACGGUGa------------UGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 31290 0.7 0.954569
Target:  5'- cGGGAGACGCUcgUGCUGCUGC-GGcgCg -3'
miRNA:   3'- -CCUUCUGUGG--ACGGUGAUGuUCuaGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.