miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 5' -49.6 NC_001847.1 + 2036 0.67 0.992905
Target:  5'- ---cGGCGCCggccgugGCCACgAUAGGGUCUu -3'
miRNA:   3'- ccuuCUGUGGa------CGGUGaUGUUCUAGA- -5'
6366 5' -49.6 NC_001847.1 + 8078 0.86 0.261449
Target:  5'- aGGggGGCACC-GCCGCgGCGAGAUCg -3'
miRNA:   3'- -CCuuCUGUGGaCGGUGaUGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 11337 0.75 0.792423
Target:  5'- aGGAcGGCGCCUGCCGCUGCc------ -3'
miRNA:   3'- -CCUuCUGUGGACGGUGAUGuucuaga -5'
6366 5' -49.6 NC_001847.1 + 12906 0.71 0.930675
Target:  5'- cGGAAGcgcGCGCCgUGCCGCcGCGGGggCg -3'
miRNA:   3'- -CCUUC---UGUGG-ACGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 17816 0.72 0.900152
Target:  5'- gGGAGGGCGCCaUGCCAgUGC-GGcgCa -3'
miRNA:   3'- -CCUUCUGUGG-ACGGUgAUGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 21907 0.66 0.996759
Target:  5'- aGGAGACgGCCgagGCCGCggGCGAGGc-- -3'
miRNA:   3'- cCUUCUG-UGGa--CGGUGa-UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 22389 0.7 0.945798
Target:  5'- aGAAGGCGCCcggGCCGCgGCGAGcgUg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 27406 0.73 0.871069
Target:  5'- gGGggGGCGCUguUGCCGCcgGCGcGGUCg -3'
miRNA:   3'- -CCuuCUGUGG--ACGGUGa-UGUuCUAGa -5'
6366 5' -49.6 NC_001847.1 + 27454 0.67 0.989226
Target:  5'- cGggGGC-CCUGCCGCUGCc------ -3'
miRNA:   3'- cCuuCUGuGGACGGUGAUGuucuaga -5'
6366 5' -49.6 NC_001847.1 + 27813 0.69 0.972155
Target:  5'- cGAGGGCGCCgagGCCGaagACGcggAGAUCg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUga-UGU---UCUAGa -5'
6366 5' -49.6 NC_001847.1 + 28953 0.73 0.838171
Target:  5'- uGGAGACGCUgGCCGCgGCGGGGUUUa -3'
miRNA:   3'- cCUUCUGUGGaCGGUGaUGUUCUAGA- -5'
6366 5' -49.6 NC_001847.1 + 30361 0.67 0.990588
Target:  5'- gGGGAGGCGCUggcggcGCCGCccgGCGAGGa-- -3'
miRNA:   3'- -CCUUCUGUGGa-----CGGUGa--UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 30440 0.68 0.979985
Target:  5'- cGGAGGCGCCgggGCUGC-ACGAGGUg- -3'
miRNA:   3'- cCUUCUGUGGa--CGGUGaUGUUCUAga -5'
6366 5' -49.6 NC_001847.1 + 30849 0.67 0.989226
Target:  5'- -cGAGGCGCC-GCCGCUGC-GGcUCUg -3'
miRNA:   3'- ccUUCUGUGGaCGGUGAUGuUCuAGA- -5'
6366 5' -49.6 NC_001847.1 + 31290 0.7 0.954569
Target:  5'- cGGGAGACGCUcgUGCUGCUGC-GGcgCg -3'
miRNA:   3'- -CCUUCUGUGG--ACGGUGAUGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 32567 0.73 0.871069
Target:  5'- aGGAuGGCGCCgcccGCCGCUGCcccagagcuGGGAUCg -3'
miRNA:   3'- -CCUuCUGUGGa---CGGUGAUG---------UUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 33375 0.67 0.987715
Target:  5'- cGGAAGGCG-CUGCCGC--CAAGAa-- -3'
miRNA:   3'- -CCUUCUGUgGACGGUGauGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 33762 0.69 0.968794
Target:  5'- --uGGACGCgcuguugCUGCCGCUGCAGGGcuUCg -3'
miRNA:   3'- ccuUCUGUG-------GACGGUGAUGUUCU--AGa -5'
6366 5' -49.6 NC_001847.1 + 34118 0.7 0.948538
Target:  5'- cGGAGccugcGGCGCCUGCCGCgguggccgccgcgGCGAGcgCg -3'
miRNA:   3'- -CCUU-----CUGUGGACGGUGa------------UGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 43268 0.7 0.958572
Target:  5'- cGGggGGCACCUGCUGCgACGc----- -3'
miRNA:   3'- -CCuuCUGUGGACGGUGaUGUucuaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.