miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6366 5' -49.6 NC_001847.1 + 8078 0.86 0.261449
Target:  5'- aGGggGGCACC-GCCGCgGCGAGAUCg -3'
miRNA:   3'- -CCuuCUGUGGaCGGUGaUGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 130626 0.69 0.972155
Target:  5'- cGAGGGCGCCgagGCCGaagACGcggAGAUCg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUga-UGU---UCUAGa -5'
6366 5' -49.6 NC_001847.1 + 48046 0.69 0.974977
Target:  5'- cGAAGACACCuUGUagaaaaGCUGCGGGcgCg -3'
miRNA:   3'- cCUUCUGUGG-ACGg-----UGAUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 124720 0.66 0.996759
Target:  5'- aGGAGACgGCCgagGCCGCggGCGAGGc-- -3'
miRNA:   3'- cCUUCUG-UGGa--CGGUGa-UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 130219 0.73 0.871069
Target:  5'- gGGggGGCGCUguUGCCGCcgGCGcGGUCg -3'
miRNA:   3'- -CCuuCUGUGG--ACGGUGa-UGUuCUAGa -5'
6366 5' -49.6 NC_001847.1 + 53423 0.71 0.919262
Target:  5'- uGGAGGGCGCgUGCCGCUuccACcGGcgCg -3'
miRNA:   3'- -CCUUCUGUGgACGGUGA---UGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 52548 0.71 0.925102
Target:  5'- cGGAGGGCGCg-GCCgacauGCUGCGAGAgCUg -3'
miRNA:   3'- -CCUUCUGUGgaCGG-----UGAUGUUCUaGA- -5'
6366 5' -49.6 NC_001847.1 + 48843 0.7 0.941021
Target:  5'- cGggGGCGCCUcgGCCGCgcggcGCGAGGUa- -3'
miRNA:   3'- cCuuCUGUGGA--CGGUGa----UGUUCUAga -5'
6366 5' -49.6 NC_001847.1 + 134103 0.7 0.954569
Target:  5'- cGGGAGACGCUcgUGCUGCUGC-GGcgCg -3'
miRNA:   3'- -CCUUCUGUGG--ACGGUGAUGuUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 99789 0.69 0.969111
Target:  5'- cGGggGGCAgC-GCCugUgguGCGGGGUCg -3'
miRNA:   3'- -CCuuCUGUgGaCGGugA---UGUUCUAGa -5'
6366 5' -49.6 NC_001847.1 + 57129 0.69 0.963759
Target:  5'- uGGggGACGCCauggccgugacguacUGCCACgagcuggGCGAGGg-- -3'
miRNA:   3'- -CCuuCUGUGG---------------ACGGUGa------UGUUCUaga -5'
6366 5' -49.6 NC_001847.1 + 34118 0.7 0.948538
Target:  5'- cGGAGccugcGGCGCCUGCCGCgguggccgccgcgGCGAGcgCg -3'
miRNA:   3'- -CCUU-----CUGUGGACGGUGa------------UGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 76397 0.76 0.711409
Target:  5'- gGGggGGCGCCggggGCCGCgGCGGGggCa -3'
miRNA:   3'- -CCuuCUGUGGa---CGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 33762 0.69 0.968794
Target:  5'- --uGGACGCgcuguugCUGCCGCUGCAGGGcuUCg -3'
miRNA:   3'- ccuUCUGUG-------GACGGUGAUGUUCU--AGa -5'
6366 5' -49.6 NC_001847.1 + 78398 0.74 0.811276
Target:  5'- cGAGGAC-CCcGCCGCUGCGGGcgCg -3'
miRNA:   3'- cCUUCUGuGGaCGGUGAUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 125202 0.7 0.945798
Target:  5'- aGAAGGCGCCcggGCCGCgGCGAGcgUg -3'
miRNA:   3'- cCUUCUGUGGa--CGGUGaUGUUCuaGa -5'
6366 5' -49.6 NC_001847.1 + 69745 0.69 0.969111
Target:  5'- cGAAGugGCCUGCCACcGCGc----- -3'
miRNA:   3'- cCUUCugUGGACGGUGaUGUucuaga -5'
6366 5' -49.6 NC_001847.1 + 82103 0.69 0.972155
Target:  5'- cGGAGGGCGCCUGCguUUGCGc----- -3'
miRNA:   3'- -CCUUCUGUGGACGguGAUGUucuaga -5'
6366 5' -49.6 NC_001847.1 + 28953 0.73 0.838171
Target:  5'- uGGAGACGCUgGCCGCgGCGGGGUUUa -3'
miRNA:   3'- cCUUCUGUGGaCGGUGaUGUUCUAGA- -5'
6366 5' -49.6 NC_001847.1 + 72327 0.71 0.925102
Target:  5'- uGGAcgcGGACGCgCUGCUgguGCUGCAGGAa-- -3'
miRNA:   3'- -CCU---UCUGUG-GACGG---UGAUGUUCUaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.