miRNA display CGI


Results 21 - 40 of 877 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6368 3' -59.3 NC_001847.1 + 75262 0.78 0.194707
Target:  5'- cCUCGCCAACG-CGGaGGCCGCgcgCGCGGc -3'
miRNA:   3'- -GAGCGGUUGCaGCUgUCGGCG---GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 67307 0.78 0.194707
Target:  5'- -gCGCCAGCGcCGGCAGCC-CCGcCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUGUCGGcGGC-GCC- -5'
6368 3' -59.3 NC_001847.1 + 100852 0.78 0.194707
Target:  5'- cCUCGCUGACGgccgCGAgcgcggcgccCAGCCGCCGCGc -3'
miRNA:   3'- -GAGCGGUUGCa---GCU----------GUCGGCGGCGCc -5'
6368 3' -59.3 NC_001847.1 + 27486 0.78 0.1966
Target:  5'- -aCGCCGGCuUCGGCGgcagaggccucggccGCCGCCGCGGc -3'
miRNA:   3'- gaGCGGUUGcAGCUGU---------------CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 102007 0.78 0.203843
Target:  5'- gCUCGCCAcgcggaaGCGcUCG-CcGCCGCCGCGGu -3'
miRNA:   3'- -GAGCGGU-------UGC-AGCuGuCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 4524 0.78 0.204334
Target:  5'- -gCGCaCGACGUgccucgCGGCGGCCGCcCGCGGg -3'
miRNA:   3'- gaGCG-GUUGCA------GCUGUCGGCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 70956 0.78 0.209301
Target:  5'- gUCGCCAGCGUCG-CGcCCGCCGCc- -3'
miRNA:   3'- gAGCGGUUGCAGCuGUcGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 119207 0.77 0.214372
Target:  5'- gCUCGUCGGCGcCG-CGGCCaCCGCGGg -3'
miRNA:   3'- -GAGCGGUUGCaGCuGUCGGcGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 30252 0.77 0.214372
Target:  5'- gUCGCUGGCGgCGuuGCAGCgCGCCGCGGc -3'
miRNA:   3'- gAGCGGUUGCaGC--UGUCG-GCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 31047 0.77 0.214372
Target:  5'- --gGCCGACGUCG-CGGUCGCCGCu- -3'
miRNA:   3'- gagCGGUUGCAGCuGUCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 33506 0.77 0.219548
Target:  5'- -gCGCgGGCGgCGGCGggcGCCGCCGCGGa -3'
miRNA:   3'- gaGCGgUUGCaGCUGU---CGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 134028 0.77 0.219548
Target:  5'- uCUCGCCAGCGUCG-CAGggGCaCGCGGc -3'
miRNA:   3'- -GAGCGGUUGCAGCuGUCggCG-GCGCC- -5'
6368 3' -59.3 NC_001847.1 + 29975 0.77 0.235717
Target:  5'- -cCGCCGACG-CGGCcgGGCCGgCGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUG--UCGGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 132788 0.77 0.235717
Target:  5'- -cCGCCGACG-CGGCcgGGCCGgCGCGGc -3'
miRNA:   3'- gaGCGGUUGCaGCUG--UCGGCgGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 54046 0.77 0.235717
Target:  5'- cCUCGUCGGCGcgCGGCgaGGCCGCCGCc- -3'
miRNA:   3'- -GAGCGGUUGCa-GCUG--UCGGCGGCGcc -5'
6368 3' -59.3 NC_001847.1 + 119082 0.77 0.240759
Target:  5'- -gCGCCcagcagaGGCGcCG-CGGCCGCCGCGGg -3'
miRNA:   3'- gaGCGG-------UUGCaGCuGUCGGCGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 25699 0.77 0.241325
Target:  5'- cCUCGCCGACGUa---AGCCGCCacuGCGGc -3'
miRNA:   3'- -GAGCGGUUGCAgcugUCGGCGG---CGCC- -5'
6368 3' -59.3 NC_001847.1 + 73704 0.76 0.247044
Target:  5'- cCUCGCC-GCGccCGGCGGCgCgGCCGCGGg -3'
miRNA:   3'- -GAGCGGuUGCa-GCUGUCG-G-CGGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 130743 0.76 0.247044
Target:  5'- -cCGUCGGCGUCGACGGCggCGaCCGUGGc -3'
miRNA:   3'- gaGCGGUUGCAGCUGUCG--GC-GGCGCC- -5'
6368 3' -59.3 NC_001847.1 + 78251 0.76 0.252874
Target:  5'- -cCGCCGGCGUCG-CcGUCGCCgGCGGg -3'
miRNA:   3'- gaGCGGUUGCAGCuGuCGGCGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.