miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
637 5' -59.1 AC_000017.1 + 19310 0.65 0.380082
Target:  5'- gAGgAGGCAGAGGaggaGGCagaagcaccacaaGCUGaucaGAAGGu -3'
miRNA:   3'- -UCgUCCGUCUCCg---CCG-------------CGACg---CUUUC- -5'
637 5' -59.1 AC_000017.1 + 15283 0.66 0.363139
Target:  5'- cGCA-GCGGGGGCGGCaGCUuCGGc-- -3'
miRNA:   3'- uCGUcCGUCUCCGCCG-CGAcGCUuuc -5'
637 5' -59.1 AC_000017.1 + 8541 0.66 0.354435
Target:  5'- cGCGcGGCGGGcGGUGG-GCcGCGggGGu -3'
miRNA:   3'- uCGU-CCGUCU-CCGCCgCGaCGCuuUC- -5'
637 5' -59.1 AC_000017.1 + 10467 0.66 0.345878
Target:  5'- cGGC-GGCGGuGGUggaGGCGC-GCGGAAa -3'
miRNA:   3'- -UCGuCCGUCuCCG---CCGCGaCGCUUUc -5'
637 5' -59.1 AC_000017.1 + 3872 0.66 0.342497
Target:  5'- cGCGGGCGGuGGCuGCaGCggcugaagcggcgGCGGAGGc -3'
miRNA:   3'- uCGUCCGUCuCCGcCG-CGa------------CGCUUUC- -5'
637 5' -59.1 AC_000017.1 + 10787 0.66 0.337471
Target:  5'- -cCAGGCGc-GGCGGCuGCUGCGcuAGc -3'
miRNA:   3'- ucGUCCGUcuCCGCCG-CGACGCuuUC- -5'
637 5' -59.1 AC_000017.1 + 5237 0.67 0.297686
Target:  5'- cGCGGGUuGGGGCGGCuuucGCUGUa---- -3'
miRNA:   3'- uCGUCCGuCUCCGCCG----CGACGcuuuc -5'
637 5' -59.1 AC_000017.1 + 11263 0.67 0.297686
Target:  5'- -cCAGGUAGugccGGGCccGGCGCcGCGggGGu -3'
miRNA:   3'- ucGUCCGUC----UCCG--CCGCGaCGCuuUC- -5'
637 5' -59.1 AC_000017.1 + 6481 0.68 0.278478
Target:  5'- cGUAGGCgcucguugguccagcAGAGGCGGCcGCccuUGCGcGAGc -3'
miRNA:   3'- uCGUCCG---------------UCUCCGCCG-CG---ACGCuUUC- -5'
637 5' -59.1 AC_000017.1 + 26302 0.68 0.268551
Target:  5'- cGUGGGUGGcGGCGGCaGCUGCa---- -3'
miRNA:   3'- uCGUCCGUCuCCGCCG-CGACGcuuuc -5'
637 5' -59.1 AC_000017.1 + 2177 0.68 0.261637
Target:  5'- cAGCAGGaggaAGccAGGCGGCGgCgGCGgcAGg -3'
miRNA:   3'- -UCGUCCg---UC--UCCGCCGC-GaCGCuuUC- -5'
637 5' -59.1 AC_000017.1 + 23969 0.69 0.241761
Target:  5'- aAGC-GGCuGAGGCGGCGUcuCGAGu- -3'
miRNA:   3'- -UCGuCCGuCUCCGCCGCGacGCUUuc -5'
637 5' -59.1 AC_000017.1 + 8645 0.69 0.235421
Target:  5'- gAGgGGGCAGGGGCacgucGGCGCcGCGn--- -3'
miRNA:   3'- -UCgUCCGUCUCCG-----CCGCGaCGCuuuc -5'
637 5' -59.1 AC_000017.1 + 20813 0.7 0.194869
Target:  5'- aAGCAuGGCuucaagcguuGAGGCGGUGUUGUGGGc- -3'
miRNA:   3'- -UCGU-CCGu---------CUCCGCCGCGACGCUUuc -5'
637 5' -59.1 AC_000017.1 + 26852 0.7 0.18446
Target:  5'- cAGCAGGaGGAGGa-GCGCUGCGucuGGc -3'
miRNA:   3'- -UCGUCCgUCUCCgcCGCGACGCuu-UC- -5'
637 5' -59.1 AC_000017.1 + 30727 0.71 0.156129
Target:  5'- uGGCGGGCAGcuuguagcuaAGGCGGUgguuGCUGUGGu-- -3'
miRNA:   3'- -UCGUCCGUC----------UCCGCCG----CGACGCUuuc -5'
637 5' -59.1 AC_000017.1 + 23946 0.72 0.147595
Target:  5'- cGCGGGgGGcGGCGGCGacgGCGAcGGg -3'
miRNA:   3'- uCGUCCgUCuCCGCCGCga-CGCUuUC- -5'
637 5' -59.1 AC_000017.1 + 24201 0.72 0.147595
Target:  5'- cGGCAucGGUGGAGGCGGUGgUgGCGAAc- -3'
miRNA:   3'- -UCGU--CCGUCUCCGCCGCgA-CGCUUuc -5'
637 5' -59.1 AC_000017.1 + 26532 0.72 0.14349
Target:  5'- -aCGGGCAGugccGGCGGCGCcugaggaGCGGAGGu -3'
miRNA:   3'- ucGUCCGUCu---CCGCCGCGa------CGCUUUC- -5'
637 5' -59.1 AC_000017.1 + 12337 0.73 0.117565
Target:  5'- cGGCGGuGC--GGGCGGCGCUGC-AGAGc -3'
miRNA:   3'- -UCGUC-CGucUCCGCCGCGACGcUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.