Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6370 | 3' | -54.6 | NC_001847.1 | + | 130097 | 0.66 | 0.918636 |
Target: 5'- cGACCGCgacgcgGGCUGG-GAC-GAGUa-- -3' miRNA: 3'- uUUGGCGa-----CCGACCuCUGgCUCAaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 74656 | 0.66 | 0.918636 |
Target: 5'- cAGCUGCUGcGcCUGGAGccgGCCGAGc--- -3' miRNA: 3'- uUUGGCGAC-C-GACCUC---UGGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 43843 | 0.66 | 0.918636 |
Target: 5'- ---gCGCUGGCgcugcUGGAGcCCGAGg--- -3' miRNA: 3'- uuugGCGACCG-----ACCUCuGGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 90861 | 0.66 | 0.912639 |
Target: 5'- gGGGCCGg-GGCUGGugucgAGGCCGGGg--- -3' miRNA: 3'- -UUUGGCgaCCGACC-----UCUGGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 101144 | 0.66 | 0.906388 |
Target: 5'- uGGgCGCgggGGCUGG-GGCCGGGg--- -3' miRNA: 3'- uUUgGCGa--CCGACCuCUGGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 33728 | 0.66 | 0.899887 |
Target: 5'- gGAGCCGC-GGCgGGAGAC-GAGa--- -3' miRNA: 3'- -UUUGGCGaCCGaCCUCUGgCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 102669 | 0.66 | 0.899887 |
Target: 5'- cGGCCGCgagGGCgGGGGGgCGGGg--- -3' miRNA: 3'- uUUGGCGa--CCGaCCUCUgGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 93784 | 0.66 | 0.897888 |
Target: 5'- -cGCCGCuUGGCUGGuuccgcgcggccgcGcGGCCGAGUc-- -3' miRNA: 3'- uuUGGCG-ACCGACC--------------U-CUGGCUCAaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 32947 | 0.66 | 0.893138 |
Target: 5'- gGGGCCGggggGGCggaGGAGGCCGGGg--- -3' miRNA: 3'- -UUUGGCga--CCGa--CCUCUGGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 32684 | 0.67 | 0.886144 |
Target: 5'- -cGCCGgUGGCUGGAGGggcgcCCGAc---- -3' miRNA: 3'- uuUGGCgACCGACCUCU-----GGCUcaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 79538 | 0.67 | 0.878911 |
Target: 5'- -cGCCGUcggGGCcggGGGGGCUGGGgcUCg -3' miRNA: 3'- uuUGGCGa--CCGa--CCUCUGGCUCaaAG- -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 32918 | 0.67 | 0.863745 |
Target: 5'- gGGGCCGCggacGGgaGGAGGCCGGc---- -3' miRNA: 3'- -UUUGGCGa---CCgaCCUCUGGCUcaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 37583 | 0.67 | 0.855825 |
Target: 5'- uGGCCGCUgcGGCUGcGGcGGCCGGGg--- -3' miRNA: 3'- uUUGGCGA--CCGAC-CU-CUGGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 33943 | 0.67 | 0.847688 |
Target: 5'- -uACCGCgagGcGCUGGAGAacCCGAGc--- -3' miRNA: 3'- uuUGGCGa--C-CGACCUCU--GGCUCaaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 29590 | 0.68 | 0.839342 |
Target: 5'- -cGCCGCgccgGGCcGGGGGCCG-GUg-- -3' miRNA: 3'- uuUGGCGa---CCGaCCUCUGGCuCAaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 132403 | 0.68 | 0.839342 |
Target: 5'- -cGCCGCgccgGGCcGGGGGCCG-GUg-- -3' miRNA: 3'- uuUGGCGa---CCGaCCUCUGGCuCAaag -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 108453 | 0.68 | 0.839342 |
Target: 5'- cGAGCUGC-GGCUGGAGcCCGccGGcgUCa -3' miRNA: 3'- -UUUGGCGaCCGACCUCuGGC--UCaaAG- -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 38422 | 0.68 | 0.813131 |
Target: 5'- -cGCCGCaggGGCgGGAGcCCGAGgggCg -3' miRNA: 3'- uuUGGCGa--CCGaCCUCuGGCUCaaaG- -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 7297 | 0.69 | 0.794765 |
Target: 5'- cGAGCCGCUGGCgcGGcgccugagcGGACCGAcgcuaUUUCg -3' miRNA: 3'- -UUUGGCGACCGa-CC---------UCUGGCUc----AAAG- -5' |
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6370 | 3' | -54.6 | NC_001847.1 | + | 50104 | 0.69 | 0.785342 |
Target: 5'- cGGCCaGCU-GCUGGGGGCCGGGc--- -3' miRNA: 3'- uUUGG-CGAcCGACCUCUGGCUCaaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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