miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6373 3' -55.9 NC_001847.1 + 81054 0.71 0.627761
Target:  5'- -gGCGACGUgggcGUGGGCgGggccugGCUGGACGg -3'
miRNA:   3'- gaCGCUGCA----CGCCCGgCa-----CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 102581 0.71 0.627761
Target:  5'- -aGCGGCGgGCGGcGCCauccUGCUGGGCGa -3'
miRNA:   3'- gaCGCUGCaCGCC-CGGc---ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 66177 0.71 0.638114
Target:  5'- gUGCc-CGcGCGGGCCGcGCUGGACGc -3'
miRNA:   3'- gACGcuGCaCGCCCGGCaCGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 119526 0.71 0.648462
Target:  5'- -gGCGGCG-GcCGcGGCCGgcagGCUGGGCAa -3'
miRNA:   3'- gaCGCUGCaC-GC-CCGGCa---CGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 9007 0.71 0.648462
Target:  5'- uUGCcauCGUGCGcGGCCGcgacccccUGCUAGACGc -3'
miRNA:   3'- gACGcu-GCACGC-CCGGC--------ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 63428 0.7 0.66911
Target:  5'- -cGCGGCGccgGCGGGCCG-GCgcaccgcGCAg -3'
miRNA:   3'- gaCGCUGCa--CGCCCGGCaCGauu----UGU- -5'
6373 3' -55.9 NC_001847.1 + 53986 0.7 0.66911
Target:  5'- -aGCGGCGcgGCGGGCCaGUcgucGCUuAACAc -3'
miRNA:   3'- gaCGCUGCa-CGCCCGG-CA----CGAuUUGU- -5'
6373 3' -55.9 NC_001847.1 + 70463 0.7 0.678366
Target:  5'- aCUGCGACacgcGCGGGCgcccgguggauggCGUGCUGGugAc -3'
miRNA:   3'- -GACGCUGca--CGCCCG-------------GCACGAUUugU- -5'
6373 3' -55.9 NC_001847.1 + 3009 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 105822 0.7 0.688613
Target:  5'- -cGCGcuccaccGCGUcGCGGGCCGcGCcGAGCAg -3'
miRNA:   3'- gaCGC-------UGCA-CGCCCGGCaCGaUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 16056 0.7 0.689635
Target:  5'- -cGCGGCGgccGCGGcGCCucUGCUGGGCGc -3'
miRNA:   3'- gaCGCUGCa--CGCC-CGGc-ACGAUUUGU- -5'
6373 3' -55.9 NC_001847.1 + 128651 0.7 0.693719
Target:  5'- -gGCGACGccgcuaccuacgaccUGCaGGCCGUGCgGGACu -3'
miRNA:   3'- gaCGCUGC---------------ACGcCCGGCACGaUUUGu -5'
6373 3' -55.9 NC_001847.1 + 58671 0.7 0.699829
Target:  5'- uUGCGGCGguuggGCGGGCgGcagGCUGGcCAu -3'
miRNA:   3'- gACGCUGCa----CGCCCGgCa--CGAUUuGU- -5'
6373 3' -55.9 NC_001847.1 + 100644 0.69 0.709964
Target:  5'- gCUGCGGCGccaGGGCCGcGCUGcugcGGCGg -3'
miRNA:   3'- -GACGCUGCacgCCCGGCaCGAU----UUGU- -5'
6373 3' -55.9 NC_001847.1 + 34174 0.69 0.709964
Target:  5'- gCUGaGGCGcUGCGGGCCGgggGCgc-GCAc -3'
miRNA:   3'- -GACgCUGC-ACGCCCGGCa--CGauuUGU- -5'
6373 3' -55.9 NC_001847.1 + 74895 0.69 0.709964
Target:  5'- cCUGCGAaGU-CGGcGCCGUGCUAGc-- -3'
miRNA:   3'- -GACGCUgCAcGCC-CGGCACGAUUugu -5'
6373 3' -55.9 NC_001847.1 + 26030 0.69 0.720031
Target:  5'- -gGCGGCagcaaaagGUGCGGGCCagGUGCUcgcucggcAGGCAa -3'
miRNA:   3'- gaCGCUG--------CACGCCCGG--CACGA--------UUUGU- -5'
6373 3' -55.9 NC_001847.1 + 78983 0.69 0.720031
Target:  5'- -gGgGGCGUGCucGGGCgGcUGCUGAGCc -3'
miRNA:   3'- gaCgCUGCACG--CCCGgC-ACGAUUUGu -5'
6373 3' -55.9 NC_001847.1 + 30141 0.69 0.720031
Target:  5'- -cGCGACGcGCGGcgcGCCGUGCg----- -3'
miRNA:   3'- gaCGCUGCaCGCC---CGGCACGauuugu -5'
6373 3' -55.9 NC_001847.1 + 122757 0.69 0.730022
Target:  5'- gCUGCGcauacACGgucCGGGCCGUGCgcuccAGCAg -3'
miRNA:   3'- -GACGC-----UGCac-GCCCGGCACGau---UUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.