miRNA display CGI


Results 1 - 20 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 109679 1.1 0.000727
Target:  5'- gAGUACGCCACCCUGCGCGCGCUCGGCc -3'
miRNA:   3'- -UCAUGCGGUGGGACGCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 128442 0.91 0.016663
Target:  5'- cAGUGCGCUcgGCCCUGCGCGCGCgccCGGCc -3'
miRNA:   3'- -UCAUGCGG--UGGGACGCGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 89119 0.84 0.05102
Target:  5'- --aGCGCCGCCCcgguggucgUGCGCGCGCUCGuGCc -3'
miRNA:   3'- ucaUGCGGUGGG---------ACGCGCGCGAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 83479 0.84 0.055069
Target:  5'- cGUACGCCGCCCUguugcggGCGCaGCGCcgCGGCg -3'
miRNA:   3'- uCAUGCGGUGGGA-------CGCG-CGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 60802 0.81 0.081706
Target:  5'- --cGCGCCACCa-GCGCGCGCgccugCGGCa -3'
miRNA:   3'- ucaUGCGGUGGgaCGCGCGCGa----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 77705 0.8 0.095403
Target:  5'- cGUGCGCgCGCgCgcugGUGCGCGCUUGGCg -3'
miRNA:   3'- uCAUGCG-GUGgGa---CGCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131346 0.8 0.097888
Target:  5'- ---cCGCCGCCCggccGCGUGCGCuUCGGCg -3'
miRNA:   3'- ucauGCGGUGGGa---CGCGCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 28533 0.8 0.097888
Target:  5'- ---cCGCCGCCCggccGCGUGCGCuUCGGCg -3'
miRNA:   3'- ucauGCGGUGGGa---CGCGCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 134855 0.8 0.100434
Target:  5'- gGGgACGgCGCCC-GCGCGgGCUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGaCGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 32042 0.8 0.100434
Target:  5'- gGGgACGgCGCCC-GCGCGgGCUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGaCGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 116325 0.79 0.105714
Target:  5'- gAGgACGCCguGCCCaUGCGCGCGCU-GGCg -3'
miRNA:   3'- -UCaUGCGG--UGGG-ACGCGCGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 36817 0.79 0.108451
Target:  5'- cGUGCGCCACCggcgcgccgaCUGggggcuggcggaCGUGCGCUCGGCg -3'
miRNA:   3'- uCAUGCGGUGG----------GAC------------GCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 33674 0.79 0.114126
Target:  5'- uAGcGCGCCGCCCuUGCGgcCGCGCggCGGCa -3'
miRNA:   3'- -UCaUGCGGUGGG-ACGC--GCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 100488 0.79 0.117066
Target:  5'- --cGCgGCCGCCCccucgGCGCGcCGCUCGGCc -3'
miRNA:   3'- ucaUG-CGGUGGGa----CGCGC-GCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 49805 0.79 0.117066
Target:  5'- gGGUGCGCUGCUgCUGgGCGCGCUggCGGCc -3'
miRNA:   3'- -UCAUGCGGUGG-GACgCGCGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 72515 0.78 0.126315
Target:  5'- gAGUACGCC-CCauucgcGCGCGCGCguucgCGGCg -3'
miRNA:   3'- -UCAUGCGGuGGga----CGCGCGCGa----GCCG- -5'
6374 3' -61.3 NC_001847.1 + 116253 0.78 0.129545
Target:  5'- cGGUACGCgGCgCUGCggacucugGCGcCGCUCGGCg -3'
miRNA:   3'- -UCAUGCGgUGgGACG--------CGC-GCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 81197 0.78 0.132852
Target:  5'- --gGCGCCAgCCgGCGCGCGCguagaugcaggcUCGGCg -3'
miRNA:   3'- ucaUGCGGUgGGaCGCGCGCG------------AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 57460 0.78 0.136237
Target:  5'- --cACGCCGCCUUGaa-GCGCUCGGCc -3'
miRNA:   3'- ucaUGCGGUGGGACgcgCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 75942 0.78 0.136237
Target:  5'- cGUGCGCCGCCacacgcgGCGUGUGCUCGuuGCa -3'
miRNA:   3'- uCAUGCGGUGGga-----CGCGCGCGAGC--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.