miRNA display CGI


Results 1 - 20 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 936 0.69 0.459197
Target:  5'- ---cCGCCGCCCUcggcccgcGCGCGCcGCUCcacgcugcgccgGGCg -3'
miRNA:   3'- ucauGCGGUGGGA--------CGCGCG-CGAG------------CCG- -5'
6374 3' -61.3 NC_001847.1 + 1020 0.71 0.351036
Target:  5'- cAGgcCGCCGCCCgcgGCGCGcCGCagCaGCa -3'
miRNA:   3'- -UCauGCGGUGGGa--CGCGC-GCGa-GcCG- -5'
6374 3' -61.3 NC_001847.1 + 1141 0.71 0.3435
Target:  5'- --gGCGgCGCCUcgGCGCGCGgCUcCGGCa -3'
miRNA:   3'- ucaUGCgGUGGGa-CGCGCGC-GA-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 1151 0.69 0.468241
Target:  5'- uGUACuGCCGaugCC-GCGCGCGCUcccagcccCGGCg -3'
miRNA:   3'- uCAUG-CGGUg--GGaCGCGCGCGA--------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 1213 0.67 0.572829
Target:  5'- --gGCGCCAgcUCCaGCGCGCGCcgcccgcaGGCc -3'
miRNA:   3'- ucaUGCGGU--GGGaCGCGCGCGag------CCG- -5'
6374 3' -61.3 NC_001847.1 + 1342 0.69 0.468241
Target:  5'- --aGCGCCgcGCCCUGCGCggccauguccuuGCGCccgUCGaGCg -3'
miRNA:   3'- ucaUGCGG--UGGGACGCG------------CGCG---AGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 1520 0.75 0.2121
Target:  5'- cGUAgGCgGCCUcgGCGCGCGCgaaGGCg -3'
miRNA:   3'- uCAUgCGgUGGGa-CGCGCGCGag-CCG- -5'
6374 3' -61.3 NC_001847.1 + 1520 0.67 0.592567
Target:  5'- uGUGuuCC-CCCcGCGCGCGCUUGuGCc -3'
miRNA:   3'- uCAUgcGGuGGGaCGCGCGCGAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 1581 0.71 0.351036
Target:  5'- --gGCGCgCGCCa-GCGCGcCGCUCGGg -3'
miRNA:   3'- ucaUGCG-GUGGgaCGCGC-GCGAGCCg -5'
6374 3' -61.3 NC_001847.1 + 1655 0.66 0.672063
Target:  5'- cGUGCGCCuGCCCgacggccggGC-CGuCGCgCGGCc -3'
miRNA:   3'- uCAUGCGG-UGGGa--------CGcGC-GCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 1801 0.68 0.52332
Target:  5'- --aGCaGCaCGCCCUGCgcgccgaGCGCGCUcacgucCGGCg -3'
miRNA:   3'- ucaUG-CG-GUGGGACG-------CGCGCGA------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 1850 0.73 0.268367
Target:  5'- --aGCGCCcgGCCCagGCGUGCGagUCGGCg -3'
miRNA:   3'- ucaUGCGG--UGGGa-CGCGCGCg-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 1913 0.66 0.632318
Target:  5'- cGUGCGagaGCCCgccGCG-GCGCggCGGCc -3'
miRNA:   3'- uCAUGCgg-UGGGa--CGCgCGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 2182 0.7 0.39867
Target:  5'- --cGCGCCGCCUggGCgGCGUGCg-GGCg -3'
miRNA:   3'- ucaUGCGGUGGGa-CG-CGCGCGagCCG- -5'
6374 3' -61.3 NC_001847.1 + 2217 0.75 0.207069
Target:  5'- cAGUAgGCCGCCa-GCGCcgcgGCGCUgGGCg -3'
miRNA:   3'- -UCAUgCGGUGGgaCGCG----CGCGAgCCG- -5'
6374 3' -61.3 NC_001847.1 + 2355 0.68 0.514745
Target:  5'- --cGCGCCgGCCCgGC-CGCG-UCGGCg -3'
miRNA:   3'- ucaUGCGG-UGGGaCGcGCGCgAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 2373 0.73 0.286145
Target:  5'- cAGU-CGCgCGCCCgcgaagacggcgGUGaCGCGCUCGGCc -3'
miRNA:   3'- -UCAuGCG-GUGGGa-----------CGC-GCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 2645 0.67 0.592567
Target:  5'- cGU-CGCCGCUUgcgGCGCcuucgcccgGCgGCUCGGCc -3'
miRNA:   3'- uCAuGCGGUGGGa--CGCG---------CG-CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 2926 0.69 0.459197
Target:  5'- cGGUccGCGCCGCCa-GCGCggccgccuccaGCGCggCGGCc -3'
miRNA:   3'- -UCA--UGCGGUGGgaCGCG-----------CGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 2995 0.66 0.662153
Target:  5'- --gGCcCCACCCUGCGCG-GCagCaGCg -3'
miRNA:   3'- ucaUGcGGUGGGACGCGCgCGa-GcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.