miRNA display CGI


Results 1 - 20 of 799 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6374 3' -61.3 NC_001847.1 + 89119 0.84 0.05102
Target:  5'- --aGCGCCGCCCcgguggucgUGCGCGCGCUCGuGCc -3'
miRNA:   3'- ucaUGCGGUGGG---------ACGCGCGCGAGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 60161 0.76 0.179009
Target:  5'- gGGUGCGCCACgCCcGCGaGCGUgUCGGCc -3'
miRNA:   3'- -UCAUGCGGUG-GGaCGCgCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 64395 0.76 0.187966
Target:  5'- --gGCGcCCGCUCUGCGCgGCGCUauUGGCa -3'
miRNA:   3'- ucaUGC-GGUGGGACGCG-CGCGA--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 25185 0.66 0.642273
Target:  5'- aGGUAgcaGCUggccagcgaGCCCcGCGCGCGgC-CGGCa -3'
miRNA:   3'- -UCAUg--CGG---------UGGGaCGCGCGC-GaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 134855 0.8 0.100434
Target:  5'- gGGgACGgCGCCC-GCGCGgGCUCGGCg -3'
miRNA:   3'- -UCaUGCgGUGGGaCGCGCgCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 36817 0.79 0.108451
Target:  5'- cGUGCGCCACCggcgcgccgaCUGggggcuggcggaCGUGCGCUCGGCg -3'
miRNA:   3'- uCAUGCGGUGG----------GAC------------GCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 75942 0.78 0.136237
Target:  5'- cGUGCGCCGCCacacgcgGCGUGUGCUCGuuGCa -3'
miRNA:   3'- uCAUGCGGUGGga-----CGCGCGCGAGC--CG- -5'
6374 3' -61.3 NC_001847.1 + 60484 0.78 0.1397
Target:  5'- --gGCGCCGCCgCuuugUGCGCGCGCgggcCGGCg -3'
miRNA:   3'- ucaUGCGGUGG-G----ACGCGCGCGa---GCCG- -5'
6374 3' -61.3 NC_001847.1 + 105881 0.77 0.143244
Target:  5'- gGGUGCGCCGCCa---GCGCGUcCGGCg -3'
miRNA:   3'- -UCAUGCGGUGGgacgCGCGCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 30496 0.76 0.174673
Target:  5'- --gGCGCgGCCCUcggGCGCGCGCUagacgacagugcCGGCg -3'
miRNA:   3'- ucaUGCGgUGGGA---CGCGCGCGA------------GCCG- -5'
6374 3' -61.3 NC_001847.1 + 23466 0.77 0.15058
Target:  5'- cGUcCGCCGCCUcgGCcauCGCGCUCGGCg -3'
miRNA:   3'- uCAuGCGGUGGGa-CGc--GCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60968 0.77 0.143244
Target:  5'- aGGUugGCguCCCcgcUGCGCGCGCccaCGGCg -3'
miRNA:   3'- -UCAugCGguGGG---ACGCGCGCGa--GCCG- -5'
6374 3' -61.3 NC_001847.1 + 83479 0.84 0.055069
Target:  5'- cGUACGCCGCCCUguugcggGCGCaGCGCcgCGGCg -3'
miRNA:   3'- uCAUGCGGUGGGA-------CGCG-CGCGa-GCCG- -5'
6374 3' -61.3 NC_001847.1 + 11854 0.77 0.162225
Target:  5'- --gGCGCCGCCCUGCGgGCgGCgCGaGCg -3'
miRNA:   3'- ucaUGCGGUGGGACGCgCG-CGaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 77705 0.8 0.095403
Target:  5'- cGUGCGCgCGCgCgcugGUGCGCGCUUGGCg -3'
miRNA:   3'- uCAUGCG-GUGgGa---CGCGCGCGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 15289 0.77 0.143244
Target:  5'- gGGUACGCCugCuggCUGCGCGCGggCGuGCg -3'
miRNA:   3'- -UCAUGCGGugG---GACGCGCGCgaGC-CG- -5'
6374 3' -61.3 NC_001847.1 + 20116 0.76 0.174673
Target:  5'- cGGacuCGCCGCCCUcaugGCGCGCggcgaacgaaGCUCGGCc -3'
miRNA:   3'- -UCau-GCGGUGGGA----CGCGCG----------CGAGCCG- -5'
6374 3' -61.3 NC_001847.1 + 60715 0.76 0.185238
Target:  5'- cGUGCGCCGCCaCgaccuccacgacggGCGCGgGCgCGGCg -3'
miRNA:   3'- uCAUGCGGUGG-Ga-------------CGCGCgCGaGCCG- -5'
6374 3' -61.3 NC_001847.1 + 131346 0.8 0.097888
Target:  5'- ---cCGCCGCCCggccGCGUGCGCuUCGGCg -3'
miRNA:   3'- ucauGCGGUGGGa---CGCGCGCG-AGCCG- -5'
6374 3' -61.3 NC_001847.1 + 81197 0.78 0.132852
Target:  5'- --gGCGCCAgCCgGCGCGCGCguagaugcaggcUCGGCg -3'
miRNA:   3'- ucaUGCGGUgGGaCGCGCGCG------------AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.