miRNA display CGI


Results 21 - 40 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 131189 0.68 0.69073
Target:  5'- cUCGCCGCcgGAGacggCGCcccccccGCCGCGGCGc -3'
miRNA:   3'- -AGCGGCG--CUCa---GUGaa-----CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 130776 0.69 0.630084
Target:  5'- gCGCuCGCG-GUCGCgguggaggcgGCCGCGGCc- -3'
miRNA:   3'- aGCG-GCGCuCAGUGaa--------CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 130622 0.73 0.401214
Target:  5'- cCGCCGCGAGgCACgucgUGCgcacguugGCGGCGAa -3'
miRNA:   3'- aGCGGCGCUCaGUGa---ACGg-------CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 130150 0.69 0.599673
Target:  5'- cCGCCGCGcuuuGcCGCggccGCCGCAGCc- -3'
miRNA:   3'- aGCGGCGCu---CaGUGaa--CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 129941 0.73 0.384497
Target:  5'- cCGUCGCGGcgCGCUUGCCGCGcucGCGGc -3'
miRNA:   3'- aGCGGCGCUcaGUGAACGGCGU---CGCU- -5'
6375 3' -58.5 NC_001847.1 + 129917 0.69 0.589573
Target:  5'- uUUGCCGCGcG-CGCcccgccggccGCCGCGGCGAg -3'
miRNA:   3'- -AGCGGCGCuCaGUGaa--------CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 129380 0.66 0.796014
Target:  5'- aCGCCGCGcuUCGCguuggcgcGCCGgaCGGCGGu -3'
miRNA:   3'- aGCGGCGCucAGUGaa------CGGC--GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 129193 0.71 0.500786
Target:  5'- gCGCgCGCGcGUacguacgcgCGCUUGCuCGCGGCGAc -3'
miRNA:   3'- aGCG-GCGCuCA---------GUGAACG-GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 128758 0.69 0.630084
Target:  5'- uUCGCgGCGcuuGcCGCcuucugcUGCCGCAGCGGc -3'
miRNA:   3'- -AGCGgCGCu--CaGUGa------ACGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 127052 0.71 0.463196
Target:  5'- gCGCCGCG--UCGCcgaucucGCCGCGGCGGu -3'
miRNA:   3'- aGCGGCGCucAGUGaa-----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 125632 0.68 0.660509
Target:  5'- gCGCCGCccgcucggcucGGGUcCGCUcGUCGCGGCGc -3'
miRNA:   3'- aGCGGCG-----------CUCA-GUGAaCGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 125577 0.68 0.680692
Target:  5'- -gGCCGCGGGcggCggGCUggacgGCUGCAGCGc -3'
miRNA:   3'- agCGGCGCUCa--G--UGAa----CGGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 125032 0.7 0.526903
Target:  5'- cUCGCCGCGAaggcggcuuuccccGcCGCUUGUgcucccgcgCGCGGCGGg -3'
miRNA:   3'- -AGCGGCGCU--------------CaGUGAACG---------GCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 124858 0.69 0.630084
Target:  5'- uUCGCUGCugGAGUCGC-UGCCGCucacgucGCa- -3'
miRNA:   3'- -AGCGGCG--CUCAGUGaACGGCGu------CGcu -5'
6375 3' -58.5 NC_001847.1 + 124312 0.71 0.481814
Target:  5'- gCGCCGCc-GUCGCgcgcaggUGCUGCAGCa- -3'
miRNA:   3'- aGCGGCGcuCAGUGa------ACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 123524 0.7 0.559483
Target:  5'- cUGCCGCGGGcUCgGCUaaggccaagGCCGCuGCGAa -3'
miRNA:   3'- aGCGGCGCUC-AG-UGAa--------CGGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 123476 0.74 0.33719
Target:  5'- cCGCCGCGGGcUCgGCUgggGCCGCcgcaAGCGGg -3'
miRNA:   3'- aGCGGCGCUC-AG-UGAa--CGGCG----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 123056 0.67 0.700719
Target:  5'- -gGCCGCGGG-CGCcggacCCGCGGCGc -3'
miRNA:   3'- agCGGCGCUCaGUGaac--GGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 122533 0.67 0.70867
Target:  5'- gUGCCGCccggacccugccGGUCGCUgGCCGCAcgaguGCGAg -3'
miRNA:   3'- aGCGGCGc-----------UCAGUGAaCGGCGU-----CGCU- -5'
6375 3' -58.5 NC_001847.1 + 121192 0.69 0.589573
Target:  5'- cUCGCCaCGGGcCGCa-GCCGCAGCu- -3'
miRNA:   3'- -AGCGGcGCUCaGUGaaCGGCGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.