miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 108177 1.09 0.003917
Target:  5'- gCUGCGCGCGCACCUCAUUUCCAACUCc -3'
miRNA:   3'- -GACGCGCGCGUGGAGUAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 91960 0.83 0.188456
Target:  5'- -gGCGCGCGCA-CUC-UUUCCAACUCa -3'
miRNA:   3'- gaCGCGCGCGUgGAGuAAAGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 110389 0.8 0.268393
Target:  5'- -cGCGCGuCGCACCUCAg--CCGGCUg -3'
miRNA:   3'- gaCGCGC-GCGUGGAGUaaaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 43196 0.78 0.373559
Target:  5'- -aGUGCGCGCGCCUCGUggauuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGAGUAaagguUGAG- -5'
6377 5' -53.5 NC_001847.1 + 128455 0.77 0.408329
Target:  5'- cCUGCGCGCGCGCC-CGg--CCGGC-Cg -3'
miRNA:   3'- -GACGCGCGCGUGGaGUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 101505 0.77 0.408329
Target:  5'- -cGCGCGCGCGCCUCGcggUCAGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGAGUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 72079 0.76 0.445051
Target:  5'- gCUGCGCcCGCGCCUCGc--CCAGCUUu -3'
miRNA:   3'- -GACGCGcGCGUGGAGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 78321 0.76 0.464092
Target:  5'- -gGCGCGCGCGCCgCGggcCCGGCUUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 61201 0.76 0.464092
Target:  5'- uUGCGCGCGCGCCagGUacgcgCCGGCUg -3'
miRNA:   3'- gACGCGCGCGUGGagUAaa---GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 93683 0.76 0.473771
Target:  5'- -cGCGCGUGCAgCUCucgUUCCggUUCa -3'
miRNA:   3'- gaCGCGCGCGUgGAGua-AAGGuuGAG- -5'
6377 5' -53.5 NC_001847.1 + 51549 0.75 0.493425
Target:  5'- gCUGCGCGCGCGCg-CGUgcUCgGGCUCg -3'
miRNA:   3'- -GACGCGCGCGUGgaGUAa-AGgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 102087 0.75 0.499394
Target:  5'- aCUGC-CGCaGCGCCUCGgccgcgagcgcgUCCAGCUCg -3'
miRNA:   3'- -GACGcGCG-CGUGGAGUaa----------AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 1811 0.75 0.533789
Target:  5'- cCUGCGCGCcgaGCGCgCUCAcgUCCGGCg- -3'
miRNA:   3'- -GACGCGCG---CGUG-GAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 102612 0.75 0.533789
Target:  5'- gCUGCGCGCGCAUCgcc--UCCGACa- -3'
miRNA:   3'- -GACGCGCGCGUGGaguaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 104624 0.75 0.533789
Target:  5'- cCUGCGCGCcgaGCGCgCUCAcgUCCGGCg- -3'
miRNA:   3'- -GACGCGCG---CGUG-GAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 119605 0.74 0.564813
Target:  5'- -cGCGCGCGCACCggcg--CCAGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 91164 0.74 0.585759
Target:  5'- -gGCcaCGCGCGCCUUAUauagaUCCAGCUCg -3'
miRNA:   3'- gaCGc-GCGCGUGGAGUAa----AGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 132306 0.74 0.59629
Target:  5'- -cGCGCGCGCugUUCAgcccgCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaa--GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 29493 0.74 0.59629
Target:  5'- -cGCGCGCGCugUUCAgcccgCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaa--GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 130864 0.73 0.604734
Target:  5'- -cGCcgGCGCGCGCCUCGUggccgccaaagCCGACUg -3'
miRNA:   3'- gaCG--CGCGCGUGGAGUAaa---------GGUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.