miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 140 0.68 0.890838
Target:  5'- aUGUGCGCGgcCAUCUUGcUUCCAaACUCa -3'
miRNA:   3'- gACGCGCGC--GUGGAGUaAAGGU-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 781 0.66 0.947877
Target:  5'- -gGCG-GCGCcgGCCUCGUcgucgUCCGACg- -3'
miRNA:   3'- gaCGCgCGCG--UGGAGUAa----AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 1165 0.66 0.951767
Target:  5'- -cGCGCGCGCucccagccccggcGCCUUAUcUCgcuaUAGCUCc -3'
miRNA:   3'- gaCGCGCGCG-------------UGGAGUAaAG----GUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 1585 0.66 0.943317
Target:  5'- -cGCGCcaGCGCGCCgcUCGgg-CCAGCg- -3'
miRNA:   3'- gaCGCG--CGCGUGG--AGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 1811 0.75 0.533789
Target:  5'- cCUGCGCGCcgaGCGCgCUCAcgUCCGGCg- -3'
miRNA:   3'- -GACGCGCG---CGUG-GAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 2199 0.66 0.946535
Target:  5'- gUGCGgGCGCACCUCAaacaugcgguagaggUCgCGGC-Cg -3'
miRNA:   3'- gACGCgCGCGUGGAGUaa-------------AG-GUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 2853 0.7 0.781993
Target:  5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 3891 0.66 0.952187
Target:  5'- -cGCGCG-GCGCCgcggCGUagCCAGCg- -3'
miRNA:   3'- gaCGCGCgCGUGGa---GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 4387 0.69 0.844862
Target:  5'- -aGCGCGCGCGCCgCGgc-CCAggcGCUg -3'
miRNA:   3'- gaCGCGCGCGUGGaGUaaaGGU---UGAg -5'
6377 5' -53.5 NC_001847.1 + 4643 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 5675 0.67 0.916704
Target:  5'- -cGuCGCGCGCGgCggCGgccgCCAGCUCa -3'
miRNA:   3'- gaC-GCGCGCGUgGa-GUaaa-GGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 6123 0.69 0.826934
Target:  5'- -gGCGCGaGCGCCUCGccgCCAucgggggGCUCg -3'
miRNA:   3'- gaCGCGCgCGUGGAGUaaaGGU-------UGAG- -5'
6377 5' -53.5 NC_001847.1 + 9546 0.66 0.938505
Target:  5'- -cGUGCGUGCGCCagcgcugCAgccgUCCAGCcCg -3'
miRNA:   3'- gaCGCGCGCGUGGa------GUaa--AGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 10072 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 12323 0.67 0.928116
Target:  5'- -gGUGgGCGCGCC-Cg---CCGGCUCg -3'
miRNA:   3'- gaCGCgCGCGUGGaGuaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 15049 0.69 0.81899
Target:  5'- -cGCGCGgGCGCUUUAUcUCCcgccccgcgcGGCUCg -3'
miRNA:   3'- gaCGCGCgCGUGGAGUAaAGG----------UUGAG- -5'
6377 5' -53.5 NC_001847.1 + 15892 0.73 0.626958
Target:  5'- -cGCGCGgGCGCCgccauaaUCAgucCCAGCUCg -3'
miRNA:   3'- gaCGCGCgCGUGG-------AGUaaaGGUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 16093 0.66 0.952187
Target:  5'- -cGCGCGCGUGCCggCGUaccgcUUCCcACa- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUA-----AAGGuUGag -5'
6377 5' -53.5 NC_001847.1 + 16184 0.66 0.946985
Target:  5'- -cGCGUaGCGCACCUCGacgggcuGCUCg -3'
miRNA:   3'- gaCGCG-CGCGUGGAGUaaaggu-UGAG- -5'
6377 5' -53.5 NC_001847.1 + 18500 0.72 0.691316
Target:  5'- -cGCGCGCGCGCCagCAgcUCUGGCg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaAGGUUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.