miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 5' -53.5 NC_001847.1 + 43196 0.78 0.373559
Target:  5'- -aGUGCGCGCGCCUCGUggauuGCUCg -3'
miRNA:   3'- gaCGCGCGCGUGGAGUAaagguUGAG- -5'
6377 5' -53.5 NC_001847.1 + 105666 0.7 0.781993
Target:  5'- -aGCGCGCGCGCCagcgccCAgg-CCGACg- -3'
miRNA:   3'- gaCGCGCGCGUGGa-----GUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 67300 0.7 0.809991
Target:  5'- -aGCGCGCGCGCCagcg--CCGGCa- -3'
miRNA:   3'- gaCGCGCGCGUGGaguaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 70132 0.66 0.952187
Target:  5'- aUGCGCauGCGCGCCa----UCCAgcaGCUCg -3'
miRNA:   3'- gACGCG--CGCGUGGaguaaAGGU---UGAG- -5'
6377 5' -53.5 NC_001847.1 + 132306 0.74 0.59629
Target:  5'- -cGCGCGCGCugUUCAgcccgCCGGCg- -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaa--GGUUGag -5'
6377 5' -53.5 NC_001847.1 + 107456 0.73 0.606848
Target:  5'- -gGCGCucGCGCGCCUCAgc-CCGACg- -3'
miRNA:   3'- gaCGCG--CGCGUGGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 99146 0.72 0.659774
Target:  5'- uCUGCGCuauccGCGCGCCUUGUggcgCCAGC-Cg -3'
miRNA:   3'- -GACGCG-----CGCGUGGAGUAaa--GGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 31026 0.72 0.659774
Target:  5'- -cGCGCGCGCGCCggCAacgCCGGC-Cg -3'
miRNA:   3'- gaCGCGCGCGUGGa-GUaaaGGUUGaG- -5'
6377 5' -53.5 NC_001847.1 + 78656 0.71 0.722382
Target:  5'- -gGuCGCGCGCGCCUgCGUcgCCGGCg- -3'
miRNA:   3'- gaC-GCGCGCGUGGA-GUAaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 60851 0.7 0.781993
Target:  5'- gCUGCGCG-GCGCCagGgcgUCCAGCg- -3'
miRNA:   3'- -GACGCGCgCGUGGagUaa-AGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 88473 0.71 0.7527
Target:  5'- -cGCGCGUGCugCUCGc--CCuACUCu -3'
miRNA:   3'- gaCGCGCGCGugGAGUaaaGGuUGAG- -5'
6377 5' -53.5 NC_001847.1 + 46908 0.71 0.722382
Target:  5'- -cGCGcCGCGCcgGCCUCGgcUCCGGCg- -3'
miRNA:   3'- gaCGC-GCGCG--UGGAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 61201 0.76 0.464092
Target:  5'- uUGCGCGCGCGCCagGUacgcgCCGGCUg -3'
miRNA:   3'- gACGCGCGCGUGGagUAaa---GGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 43524 0.7 0.772359
Target:  5'- -gGCGCGCGCGggcuuCCUCGcggCCAACa- -3'
miRNA:   3'- gaCGCGCGCGU-----GGAGUaaaGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 51549 0.75 0.493425
Target:  5'- gCUGCGCGCGCGCg-CGUgcUCgGGCUCg -3'
miRNA:   3'- -GACGCGCGCGUGgaGUAa-AGgUUGAG- -5'
6377 5' -53.5 NC_001847.1 + 69753 0.72 0.670325
Target:  5'- cCUGCcaccGCGCGCugUUCAgcuuUUUCCAGCa- -3'
miRNA:   3'- -GACG----CGCGCGugGAGU----AAAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 23107 0.7 0.781993
Target:  5'- -cGCGCGCGcCACCgcgUCGUUUCUAAa-- -3'
miRNA:   3'- gaCGCGCGC-GUGG---AGUAAAGGUUgag -5'
6377 5' -53.5 NC_001847.1 + 90312 0.7 0.800819
Target:  5'- -aGCGCGacCGCGCC-CAUUgCCGACUg -3'
miRNA:   3'- gaCGCGC--GCGUGGaGUAAaGGUUGAg -5'
6377 5' -53.5 NC_001847.1 + 104624 0.75 0.533789
Target:  5'- cCUGCGCGCcgaGCGCgCUCAcgUCCGGCg- -3'
miRNA:   3'- -GACGCGCG---CGUG-GAGUaaAGGUUGag -5'
6377 5' -53.5 NC_001847.1 + 112885 0.73 0.637552
Target:  5'- gCUGCGC-CGCGCgCUCGUcggcuucUUCCuGCUCg -3'
miRNA:   3'- -GACGCGcGCGUG-GAGUA-------AAGGuUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.