miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6382 3' -58.4 NC_001847.1 + 105150 1.12 0.000855
Target:  5'- gUCUCGGCGACAUAGCCCUGCAGCCGCg -3'
miRNA:   3'- -AGAGCCGCUGUAUCGGGACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 77922 0.87 0.050181
Target:  5'- cUCUCGGCGACG-AGCCCcgGCGGCCGg -3'
miRNA:   3'- -AGAGCCGCUGUaUCGGGa-CGUCGGCg -5'
6382 3' -58.4 NC_001847.1 + 115491 0.85 0.071134
Target:  5'- uUC-CGGCGGCcgGGCCCgcaaGCGGCCGCg -3'
miRNA:   3'- -AGaGCCGCUGuaUCGGGa---CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 37573 0.82 0.105764
Target:  5'- --gCGGCGGCGcUGGCCgCUGCGGCUGCg -3'
miRNA:   3'- agaGCCGCUGU-AUCGG-GACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 62008 0.81 0.12365
Target:  5'- --gCGGCG-CGgGGCCCUGCGGCCGUa -3'
miRNA:   3'- agaGCCGCuGUaUCGGGACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 117877 0.79 0.163883
Target:  5'- --cCGGCGAC-UGGgCCUGCGGCUGCu -3'
miRNA:   3'- agaGCCGCUGuAUCgGGACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 106415 0.79 0.163883
Target:  5'- --gCGGCGACGcuGCCC-GCGGCCGCg -3'
miRNA:   3'- agaGCCGCUGUauCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 134043 0.79 0.168075
Target:  5'- --gCGGCGGCGccGCCC-GCGGCCGCg -3'
miRNA:   3'- agaGCCGCUGUauCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 31230 0.79 0.168075
Target:  5'- --gCGGCGGCGccGCCC-GCGGCCGCg -3'
miRNA:   3'- agaGCCGCUGUauCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 116721 0.79 0.172361
Target:  5'- --gCGGCGcACGUggccaaGGCCCUGCAcGCCGCg -3'
miRNA:   3'- agaGCCGC-UGUA------UCGGGACGU-CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 105781 0.79 0.172361
Target:  5'- cCUCGGCGGCAgcGCCgCcGgGGCCGCg -3'
miRNA:   3'- aGAGCCGCUGUauCGG-GaCgUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 14525 0.79 0.172361
Target:  5'- gUCUCGGCGGCGcucgcuGCCCgcGguGCCGCc -3'
miRNA:   3'- -AGAGCCGCUGUau----CGGGa-CguCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 116623 0.78 0.200181
Target:  5'- --aCGGCGGCGcgcccgcagcgcUGGCCUcgGCAGCCGCg -3'
miRNA:   3'- agaGCCGCUGU------------AUCGGGa-CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 47553 0.78 0.205182
Target:  5'- --aCGGCGggcGCGgggAGCCCgGCGGCCGCg -3'
miRNA:   3'- agaGCCGC---UGUa--UCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 24731 0.77 0.215507
Target:  5'- aCUCGGCcguaaaGGCcgGGCCgUGCAGCCGg -3'
miRNA:   3'- aGAGCCG------CUGuaUCGGgACGUCGGCg -5'
6382 3' -58.4 NC_001847.1 + 131395 0.77 0.215507
Target:  5'- --aCGGCGACGaAGCgCUGCAcgGCCGCg -3'
miRNA:   3'- agaGCCGCUGUaUCGgGACGU--CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 41379 0.77 0.220835
Target:  5'- --gCGGCGGCcgGGCCgCcgccgGCAGCCGCg -3'
miRNA:   3'- agaGCCGCUGuaUCGG-Ga----CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 579 0.77 0.226275
Target:  5'- gUCUcCGGCGcCGgguccUGGCCCUccGCGGCCGCu -3'
miRNA:   3'- -AGA-GCCGCuGU-----AUCGGGA--CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 103392 0.77 0.226275
Target:  5'- gUCUcCGGCGcCGgguccUGGCCCUccGCGGCCGCu -3'
miRNA:   3'- -AGA-GCCGCuGU-----AUCGGGA--CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 99180 0.77 0.237495
Target:  5'- cCUUGGCGcccuCGUGGUCCUcgcgcgagGCGGCCGCg -3'
miRNA:   3'- aGAGCCGCu---GUAUCGGGA--------CGUCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.