miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6382 3' -58.4 NC_001847.1 + 77922 0.87 0.050181
Target:  5'- cUCUCGGCGACG-AGCCCcgGCGGCCGg -3'
miRNA:   3'- -AGAGCCGCUGUaUCGGGa-CGUCGGCg -5'
6382 3' -58.4 NC_001847.1 + 6843 0.75 0.31478
Target:  5'- cCUCGGCGAgGU-GCUCgaGCAGCaCGCg -3'
miRNA:   3'- aGAGCCGCUgUAuCGGGa-CGUCG-GCG- -5'
6382 3' -58.4 NC_001847.1 + 132032 0.74 0.322015
Target:  5'- cUCUCGGCcGCGgcgGGCcgcggCCUGcCGGCCGCg -3'
miRNA:   3'- -AGAGCCGcUGUa--UCG-----GGAC-GUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 134652 0.66 0.797148
Target:  5'- -gUUGGCGcGCGgccGCCCcGCcGCCGCc -3'
miRNA:   3'- agAGCCGC-UGUau-CGGGaCGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 105781 0.79 0.172361
Target:  5'- cCUCGGCGGCAgcGCCgCcGgGGCCGCg -3'
miRNA:   3'- aGAGCCGCUGUauCGG-GaCgUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 47553 0.78 0.205182
Target:  5'- --aCGGCGggcGCGgggAGCCCgGCGGCCGCg -3'
miRNA:   3'- agaGCCGC---UGUa--UCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 103392 0.77 0.226275
Target:  5'- gUCUcCGGCGcCGgguccUGGCCCUccGCGGCCGCu -3'
miRNA:   3'- -AGA-GCCGCuGU-----AUCGGGA--CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 131315 0.76 0.243278
Target:  5'- uUCU-GGCGagGCGUGGCCCgGCAGCgCGCc -3'
miRNA:   3'- -AGAgCCGC--UGUAUCGGGaCGUCG-GCG- -5'
6382 3' -58.4 NC_001847.1 + 62650 0.76 0.273962
Target:  5'- aCUCGGCGAgcccggcuauUAUAGCCUcaagGCGcGCCGCg -3'
miRNA:   3'- aGAGCCGCU----------GUAUCGGGa---CGU-CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 50673 0.75 0.30767
Target:  5'- ---gGGCGACGU-GCCCUGCgGGCUGUg -3'
miRNA:   3'- agagCCGCUGUAuCGGGACG-UCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 81542 0.75 0.293819
Target:  5'- gUUCGGCGGCcgAGCUCgccggccccgcGCAGCUGCg -3'
miRNA:   3'- aGAGCCGCUGuaUCGGGa----------CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 55497 0.76 0.270122
Target:  5'- -aUgGGCGACGUgGGCCCUGCugcuggcggcgcccGCCGCg -3'
miRNA:   3'- agAgCCGCUGUA-UCGGGACGu-------------CGGCG- -5'
6382 3' -58.4 NC_001847.1 + 37573 0.82 0.105764
Target:  5'- --gCGGCGGCGcUGGCCgCUGCGGCUGCg -3'
miRNA:   3'- agaGCCGCUGU-AUCGG-GACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 84162 0.75 0.293819
Target:  5'- --cCGGgGACcucGUAGCCCUagacGCGGCCGCc -3'
miRNA:   3'- agaGCCgCUG---UAUCGGGA----CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 117877 0.79 0.163883
Target:  5'- --cCGGCGAC-UGGgCCUGCGGCUGCu -3'
miRNA:   3'- agaGCCGCUGuAUCgGGACGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 132708 0.76 0.243278
Target:  5'- ---aGGCGGC--GGCCCUGcCGGCCGCc -3'
miRNA:   3'- agagCCGCUGuaUCGGGAC-GUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 131439 0.75 0.300683
Target:  5'- --gCGGCGGCcgcggGGCCC-GCGGCCGUg -3'
miRNA:   3'- agaGCCGCUGua---UCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 78979 0.75 0.31478
Target:  5'- cCUCGGgGGCGU-GCUCggGCGGCUGCu -3'
miRNA:   3'- aGAGCCgCUGUAuCGGGa-CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 134043 0.79 0.168075
Target:  5'- --gCGGCGGCGccGCCC-GCGGCCGCg -3'
miRNA:   3'- agaGCCGCUGUauCGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 24731 0.77 0.215507
Target:  5'- aCUCGGCcguaaaGGCcgGGCCgUGCAGCCGg -3'
miRNA:   3'- aGAGCCG------CUGuaUCGGgACGUCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.