miRNA display CGI


Results 1 - 20 of 521 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6382 3' -58.4 NC_001847.1 + 487 0.67 0.691614
Target:  5'- --gCGGCGGC--GGCgggGCGGCCGCg -3'
miRNA:   3'- agaGCCGCUGuaUCGggaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 579 0.77 0.226275
Target:  5'- gUCUcCGGCGcCGgguccUGGCCCUccGCGGCCGCu -3'
miRNA:   3'- -AGA-GCCGCuGU-----AUCGGGA--CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 875 0.71 0.491431
Target:  5'- aCgcgCGGCGGCGgcccgcgccggGGCCgCcGCGGCCGCc -3'
miRNA:   3'- aGa--GCCGCUGUa----------UCGG-GaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 1148 0.74 0.336853
Target:  5'- cCUCGGCG-CGcGGCuCCggcagcGCGGCCGCg -3'
miRNA:   3'- aGAGCCGCuGUaUCG-GGa-----CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 1407 0.67 0.721489
Target:  5'- cUCgcgCGGCGGCAcgGGCaCC-GCGGUgCGCg -3'
miRNA:   3'- -AGa--GCCGCUGUa-UCG-GGaCGUCG-GCG- -5'
6382 3' -58.4 NC_001847.1 + 2074 0.66 0.789025
Target:  5'- --gCGGUGGCGgcgagcgccccgcggGGCCCgcGCGGCgGCg -3'
miRNA:   3'- agaGCCGCUGUa--------------UCGGGa-CGUCGgCG- -5'
6382 3' -58.4 NC_001847.1 + 2167 0.68 0.661296
Target:  5'- gCUCGGgGAagagcggGUGGUCC-GCgAGCCGCg -3'
miRNA:   3'- aGAGCCgCUg------UAUCGGGaCG-UCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2206 0.66 0.797148
Target:  5'- cCUCggGGCGGCAgUAGgCCgccaGC-GCCGCg -3'
miRNA:   3'- aGAG--CCGCUGU-AUCgGGa---CGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2309 0.69 0.634842
Target:  5'- ---gGGCGGCAUgGGCCCcagcacgcgggcggGCAGCgGCg -3'
miRNA:   3'- agagCCGCUGUA-UCGGGa-------------CGUCGgCG- -5'
6382 3' -58.4 NC_001847.1 + 2405 0.69 0.600247
Target:  5'- gCUCGGC--CGUGGCUcgCUGC-GCCGCu -3'
miRNA:   3'- aGAGCCGcuGUAUCGG--GACGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2474 0.67 0.731308
Target:  5'- ---gGGCGGCGgcGCCCccGCcGCCGUg -3'
miRNA:   3'- agagCCGCUGUauCGGGa-CGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2569 0.71 0.472564
Target:  5'- cUUCGGCGcgggcgccuGCGcGGCCgCcGCGGCCGCa -3'
miRNA:   3'- aGAGCCGC---------UGUaUCGG-GaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2787 0.69 0.590111
Target:  5'- --cCGGCGGCcuccagGGCCgCgagcGCGGCCGCc -3'
miRNA:   3'- agaGCCGCUGua----UCGG-Ga---CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 2968 0.72 0.43508
Target:  5'- cCUCGGCGcGCAgcGCCgccggggccggcgCUGgAGCCGCg -3'
miRNA:   3'- aGAGCCGC-UGUauCGG-------------GACgUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 3033 0.68 0.681545
Target:  5'- --gCGGUcACGUcugcgcGCCCaGCAGCCGCa -3'
miRNA:   3'- agaGCCGcUGUAu-----CGGGaCGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 3101 0.67 0.731308
Target:  5'- --gCGGcCGGCAggccgcGGCCCgccGCGGCCGa -3'
miRNA:   3'- agaGCC-GCUGUa-----UCGGGa--CGUCGGCg -5'
6382 3' -58.4 NC_001847.1 + 3192 0.67 0.712587
Target:  5'- ---aGGCGACGgcgcagcgguccgccAGCUCgcGCAGCCGCu -3'
miRNA:   3'- agagCCGCUGUa--------------UCGGGa-CGUCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 3255 0.71 0.491431
Target:  5'- --cCGGCGGCAggGGCgCCgGC-GCCGCg -3'
miRNA:   3'- agaGCCGCUGUa-UCG-GGaCGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 3303 0.68 0.661296
Target:  5'- gCUCGGCGAgCGcGGCgCggGC-GCCGCu -3'
miRNA:   3'- aGAGCCGCU-GUaUCGgGa-CGuCGGCG- -5'
6382 3' -58.4 NC_001847.1 + 3412 0.7 0.569935
Target:  5'- gUCguagCGGCGGCucAUGGCCaC-GCAGgCCGCc -3'
miRNA:   3'- -AGa---GCCGCUG--UAUCGG-GaCGUC-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.