miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 30336 0.7 0.902245
Target:  5'- cGGCGGGcUGgACGA-CGAGCACc---- -3'
miRNA:   3'- -CCGUCC-ACgUGCUaGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 30368 0.67 0.977923
Target:  5'- uGGCGGGccacucgGCGCuGGUgCGGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa------CGUG-CUA-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 32891 0.71 0.866074
Target:  5'- gGGCAcGGUGCGCGccgcgcgCGAGCGCc---- -3'
miRNA:   3'- -CCGU-CCACGUGCua-----GCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 34822 0.67 0.972612
Target:  5'- cGGCAGGccgaccgggcGCugGAggCGAGCGCGc--- -3'
miRNA:   3'- -CCGUCCa---------CGugCUa-GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 36183 0.68 0.963004
Target:  5'- cGGC-GGUGCGCGG-CGAGgcCGCGUa-- -3'
miRNA:   3'- -CCGuCCACGUGCUaGCUC--GUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 36471 0.67 0.977923
Target:  5'- aGCGGGaccUGCACcuGcgCGGGCGCGUggCg -3'
miRNA:   3'- cCGUCC---ACGUG--CuaGCUCGUGUAaaG- -5'
6383 5' -51.2 NC_001847.1 + 37005 0.67 0.969636
Target:  5'- cGGCGGcG-GCGCGcUCGAGCugAc--- -3'
miRNA:   3'- -CCGUC-CaCGUGCuAGCUCGugUaaag -5'
6383 5' -51.2 NC_001847.1 + 37068 0.66 0.980274
Target:  5'- cGGCuGGUGCACGcgGUacuggcccgccUGAGCGCGg--- -3'
miRNA:   3'- -CCGuCCACGUGC--UA-----------GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 38123 0.73 0.79668
Target:  5'- cGGCGGGUGCGC---CGGGCACcgagUCu -3'
miRNA:   3'- -CCGUCCACGUGcuaGCUCGUGuaa-AG- -5'
6383 5' -51.2 NC_001847.1 + 38503 0.67 0.972612
Target:  5'- cGGgGGGcgGCGCGGUCGccGGCGCu---- -3'
miRNA:   3'- -CCgUCCa-CGUGCUAGC--UCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 41823 0.67 0.969636
Target:  5'- gGGCGGGcgGCGCGGgucccagggcUgGGGCACGUc-- -3'
miRNA:   3'- -CCGUCCa-CGUGCU----------AgCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 41904 0.66 0.986211
Target:  5'- aGGCagAGGUGguCGGcUCgcgGAGCACGUgUUCg -3'
miRNA:   3'- -CCG--UCCACguGCU-AG---CUCGUGUA-AAG- -5'
6383 5' -51.2 NC_001847.1 + 44912 0.66 0.984408
Target:  5'- cGGgGGcGUGCGCGA-CGcGCGCGUg-- -3'
miRNA:   3'- -CCgUC-CACGUGCUaGCuCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 51534 0.66 0.989332
Target:  5'- aGGCGGGggcgGCGCccaggcGUCG-GCGCAgcUCg -3'
miRNA:   3'- -CCGUCCa---CGUGc-----UAGCuCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 52272 0.68 0.955424
Target:  5'- cGGCGcGcccGCACGggCGAGCACGUg-- -3'
miRNA:   3'- -CCGUcCa--CGUGCuaGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 52288 0.7 0.914959
Target:  5'- cGGCuuuGuGUGCGCGAccgCGGGCGCGg--- -3'
miRNA:   3'- -CCGu--C-CACGUGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 53234 0.67 0.972612
Target:  5'- -cCAGGUGCGCGAggcCGcAGCucGCGUUUa -3'
miRNA:   3'- ccGUCCACGUGCUa--GC-UCG--UGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 53689 0.68 0.951265
Target:  5'- cGCAagauGUGCGCGcgCGAGCGCGc--- -3'
miRNA:   3'- cCGUc---CACGUGCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 55007 0.72 0.824176
Target:  5'- uGGCGGcGcuggaguccaUGCGCGcGUCGGGCGCGUUUg -3'
miRNA:   3'- -CCGUC-C----------ACGUGC-UAGCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 55046 0.67 0.975372
Target:  5'- cGCAGGUGgcCGCGuUCGucGCGCggUUCa -3'
miRNA:   3'- cCGUCCAC--GUGCuAGCu-CGUGuaAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.