Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 1422 | 0.66 | 0.980274 |
Target: 5'- gGGCAccgcGGUGCGCGggCccaGGCGCGUg-- -3' miRNA: 3'- -CCGU----CCACGUGCuaGc--UCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 3259 | 0.7 | 0.913734 |
Target: 5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3' miRNA: 3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 5289 | 0.66 | 0.980274 |
Target: 5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3' miRNA: 3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 8725 | 0.71 | 0.848294 |
Target: 5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3' miRNA: 3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 12558 | 0.69 | 0.93208 |
Target: 5'- cGCAGGUGCGCaa-CGGGCGCc---- -3' miRNA: 3'- cCGUCCACGUGcuaGCUCGUGuaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 13828 | 0.67 | 0.977923 |
Target: 5'- cGGCGugugacGGUGCGCGA--GGGCACGc--- -3' miRNA: 3'- -CCGU------CCACGUGCUagCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 14568 | 0.7 | 0.902245 |
Target: 5'- cGCGGGUGCugG--CGGGCGCGc--- -3' miRNA: 3'- cCGUCCACGugCuaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 15413 | 0.66 | 0.984408 |
Target: 5'- cGGCccuGGagcgcgGCACGG-CGAGCugGUUUa -3' miRNA: 3'- -CCGu--CCa-----CGUGCUaGCUCGugUAAAg -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 15545 | 0.66 | 0.989191 |
Target: 5'- uGGCGccGGUGCGCGcgcggccGUCGGGcCGCGg--- -3' miRNA: 3'- -CCGU--CCACGUGC-------UAGCUC-GUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 16706 | 0.69 | 0.920927 |
Target: 5'- cGGCAGGcGCA-GA-CGAGCACGa--- -3' miRNA: 3'- -CCGUCCaCGUgCUaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 17152 | 0.7 | 0.888513 |
Target: 5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3' miRNA: 3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 18638 | 0.7 | 0.902245 |
Target: 5'- aGGCagAGGUGCuCGG-CGAGCGCGa--- -3' miRNA: 3'- -CCG--UCCACGuGCUaGCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 19765 | 0.66 | 0.987849 |
Target: 5'- aGGCGGG-GUGCGGgcUCG-GCGCAgucaUCa -3' miRNA: 3'- -CCGUCCaCGUGCU--AGCuCGUGUaa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 20806 | 0.7 | 0.888513 |
Target: 5'- cGGCGGGUGCuuCGG-CG-GCGC-UUUCg -3' miRNA: 3'- -CCGUCCACGu-GCUaGCuCGUGuAAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 22099 | 0.66 | 0.989191 |
Target: 5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3' miRNA: 3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 22134 | 0.67 | 0.977923 |
Target: 5'- cGGCGGcGUGCugGAgCGcaaauuuguaaAGCACGUg-- -3' miRNA: 3'- -CCGUC-CACGugCUaGC-----------UCGUGUAaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 23215 | 0.66 | 0.982432 |
Target: 5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3' miRNA: 3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 23706 | 0.69 | 0.920927 |
Target: 5'- -aCGGG-GCGCGGUCG-GCGCAgaggUCg -3' miRNA: 3'- ccGUCCaCGUGCUAGCuCGUGUaa--AG- -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 26761 | 0.66 | 0.986211 |
Target: 5'- cGCGGGUGCGCGGccuggUCaGuGCGCGc--- -3' miRNA: 3'- cCGUCCACGUGCU-----AG-CuCGUGUaaag -5' |
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6383 | 5' | -51.2 | NC_001847.1 | + | 30236 | 0.67 | 0.969636 |
Target: 5'- gGGCcgAGGUGCGCGuGUCGcuGGCgGCGUUg- -3' miRNA: 3'- -CCG--UCCACGUGC-UAGC--UCG-UGUAAag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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