miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 1422 0.66 0.980274
Target:  5'- gGGCAccgcGGUGCGCGggCccaGGCGCGUg-- -3'
miRNA:   3'- -CCGU----CCACGUGCuaGc--UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 3259 0.7 0.913734
Target:  5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3'
miRNA:   3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 5289 0.66 0.980274
Target:  5'- gGGaCGGGgGUACGG-CGAGCGCGa--- -3'
miRNA:   3'- -CC-GUCCaCGUGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 8725 0.71 0.848294
Target:  5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3'
miRNA:   3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 12558 0.69 0.93208
Target:  5'- cGCAGGUGCGCaa-CGGGCGCc---- -3'
miRNA:   3'- cCGUCCACGUGcuaGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 13828 0.67 0.977923
Target:  5'- cGGCGugugacGGUGCGCGA--GGGCACGc--- -3'
miRNA:   3'- -CCGU------CCACGUGCUagCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 14568 0.7 0.902245
Target:  5'- cGCGGGUGCugG--CGGGCGCGc--- -3'
miRNA:   3'- cCGUCCACGugCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 15413 0.66 0.984408
Target:  5'- cGGCccuGGagcgcgGCACGG-CGAGCugGUUUa -3'
miRNA:   3'- -CCGu--CCa-----CGUGCUaGCUCGugUAAAg -5'
6383 5' -51.2 NC_001847.1 + 15545 0.66 0.989191
Target:  5'- uGGCGccGGUGCGCGcgcggccGUCGGGcCGCGg--- -3'
miRNA:   3'- -CCGU--CCACGUGC-------UAGCUC-GUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 16706 0.69 0.920927
Target:  5'- cGGCAGGcGCA-GA-CGAGCACGa--- -3'
miRNA:   3'- -CCGUCCaCGUgCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 17152 0.7 0.888513
Target:  5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3'
miRNA:   3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5'
6383 5' -51.2 NC_001847.1 + 18638 0.7 0.902245
Target:  5'- aGGCagAGGUGCuCGG-CGAGCGCGa--- -3'
miRNA:   3'- -CCG--UCCACGuGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 19765 0.66 0.987849
Target:  5'- aGGCGGG-GUGCGGgcUCG-GCGCAgucaUCa -3'
miRNA:   3'- -CCGUCCaCGUGCU--AGCuCGUGUaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 20806 0.7 0.888513
Target:  5'- cGGCGGGUGCuuCGG-CG-GCGC-UUUCg -3'
miRNA:   3'- -CCGUCCACGu-GCUaGCuCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 22099 0.66 0.989191
Target:  5'- cGGCAGGcGCgccggggGCGAcagCGGGCGCGc--- -3'
miRNA:   3'- -CCGUCCaCG-------UGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 22134 0.67 0.977923
Target:  5'- cGGCGGcGUGCugGAgCGcaaauuuguaaAGCACGUg-- -3'
miRNA:   3'- -CCGUC-CACGugCUaGC-----------UCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 23215 0.66 0.982432
Target:  5'- cGGCAGGUcccuagGUGCaGUCGAGgCGCggUUCc -3'
miRNA:   3'- -CCGUCCA------CGUGcUAGCUC-GUGuaAAG- -5'
6383 5' -51.2 NC_001847.1 + 23706 0.69 0.920927
Target:  5'- -aCGGG-GCGCGGUCG-GCGCAgaggUCg -3'
miRNA:   3'- ccGUCCaCGUGCUAGCuCGUGUaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 26761 0.66 0.986211
Target:  5'- cGCGGGUGCGCGGccuggUCaGuGCGCGc--- -3'
miRNA:   3'- cCGUCCACGUGCU-----AG-CuCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 30236 0.67 0.969636
Target:  5'- gGGCcgAGGUGCGCGuGUCGcuGGCgGCGUUg- -3'
miRNA:   3'- -CCG--UCCACGUGC-UAGC--UCG-UGUAAag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.