miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 103886 1.11 0.004859
Target:  5'- uGGCAGGUGCACGAUCGAGCACAUUUCc -3'
miRNA:   3'- -CCGUCCACGUGCUAGCUCGUGUAAAG- -5'
6383 5' -51.2 NC_001847.1 + 95167 0.78 0.485966
Target:  5'- uGGCGGGggGCGCGAUCGGGgGCGc--- -3'
miRNA:   3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 61318 0.77 0.55771
Target:  5'- cGCGGGUGCGCGGggcggggCGGGCGCGc--- -3'
miRNA:   3'- cCGUCCACGUGCUa------GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 81169 0.76 0.600075
Target:  5'- gGGCGgaagacguGGUGCGCG-UCGAGCACAg--- -3'
miRNA:   3'- -CCGU--------CCACGUGCuAGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 125516 0.74 0.696029
Target:  5'- cGGCGGGccgGCGCGGcggCGGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa--CGUGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 95098 0.74 0.70653
Target:  5'- uGGCGGGggGCGCGAUUGGGgGCGc--- -3'
miRNA:   3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 105228 0.74 0.716963
Target:  5'- cGCGGGcGCGCGGgcacaggCGGGCGCAcUUCg -3'
miRNA:   3'- cCGUCCaCGUGCUa------GCUCGUGUaAAG- -5'
6383 5' -51.2 NC_001847.1 + 67218 0.74 0.747741
Target:  5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3'
miRNA:   3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5'
6383 5' -51.2 NC_001847.1 + 80201 0.73 0.757793
Target:  5'- gGGCGGGUGCGCcg-CGaAGCGCAgggCg -3'
miRNA:   3'- -CCGUCCACGUGcuaGC-UCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 76736 0.73 0.767723
Target:  5'- gGGCGGGgaaGgACGGUCGGGCGCu---- -3'
miRNA:   3'- -CCGUCCa--CgUGCUAGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 38123 0.73 0.79668
Target:  5'- cGGCGGGUGCGC---CGGGCACcgagUCu -3'
miRNA:   3'- -CCGUCCACGUGcuaGCUCGUGuaa-AG- -5'
6383 5' -51.2 NC_001847.1 + 55007 0.72 0.824176
Target:  5'- uGGCGGcGcuggaguccaUGCGCGcGUCGGGCGCGUUUg -3'
miRNA:   3'- -CCGUC-C----------ACGUGC-UAGCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 109200 0.72 0.832971
Target:  5'- gGGCGGGUGC--GAUCGGGCAgAc--- -3'
miRNA:   3'- -CCGUCCACGugCUAGCUCGUgUaaag -5'
6383 5' -51.2 NC_001847.1 + 8725 0.71 0.848294
Target:  5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3'
miRNA:   3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 57983 0.71 0.858126
Target:  5'- aGGCAGGaccgGCGCGGUgGcGGCGCAg--- -3'
miRNA:   3'- -CCGUCCa---CGUGCUAgC-UCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 32891 0.71 0.866074
Target:  5'- gGGCAcGGUGCGCGccgcgcgCGAGCGCc---- -3'
miRNA:   3'- -CCGU-CCACGUGCua-----GCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 77699 0.71 0.873792
Target:  5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3'
miRNA:   3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5'
6383 5' -51.2 NC_001847.1 + 59552 0.71 0.881273
Target:  5'- uGGCuGGUGCugGGccUgGAGCACuUUUUu -3'
miRNA:   3'- -CCGuCCACGugCU--AgCUCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 81821 0.71 0.882008
Target:  5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3'
miRNA:   3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5'
6383 5' -51.2 NC_001847.1 + 17152 0.7 0.888513
Target:  5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3'
miRNA:   3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.