Results 1 - 20 of 93 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 103886 | 1.11 | 0.004859 |
Target: 5'- uGGCAGGUGCACGAUCGAGCACAUUUCc -3' miRNA: 3'- -CCGUCCACGUGCUAGCUCGUGUAAAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 95167 | 0.78 | 0.485966 |
Target: 5'- uGGCGGGggGCGCGAUCGGGgGCGc--- -3' miRNA: 3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 61318 | 0.77 | 0.55771 |
Target: 5'- cGCGGGUGCGCGGggcggggCGGGCGCGc--- -3' miRNA: 3'- cCGUCCACGUGCUa------GCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 81169 | 0.76 | 0.600075 |
Target: 5'- gGGCGgaagacguGGUGCGCG-UCGAGCACAg--- -3' miRNA: 3'- -CCGU--------CCACGUGCuAGCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 125516 | 0.74 | 0.696029 |
Target: 5'- cGGCGGGccgGCGCGGcggCGGGCGCAg--- -3' miRNA: 3'- -CCGUCCa--CGUGCUa--GCUCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 95098 | 0.74 | 0.70653 |
Target: 5'- uGGCGGGggGCGCGAUUGGGgGCGc--- -3' miRNA: 3'- -CCGUCCa-CGUGCUAGCUCgUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 105228 | 0.74 | 0.716963 |
Target: 5'- cGCGGGcGCGCGGgcacaggCGGGCGCAcUUCg -3' miRNA: 3'- cCGUCCaCGUGCUa------GCUCGUGUaAAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 67218 | 0.74 | 0.747741 |
Target: 5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3' miRNA: 3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 80201 | 0.73 | 0.757793 |
Target: 5'- gGGCGGGUGCGCcg-CGaAGCGCAgggCg -3' miRNA: 3'- -CCGUCCACGUGcuaGC-UCGUGUaaaG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 76736 | 0.73 | 0.767723 |
Target: 5'- gGGCGGGgaaGgACGGUCGGGCGCu---- -3' miRNA: 3'- -CCGUCCa--CgUGCUAGCUCGUGuaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 38123 | 0.73 | 0.79668 |
Target: 5'- cGGCGGGUGCGC---CGGGCACcgagUCu -3' miRNA: 3'- -CCGUCCACGUGcuaGCUCGUGuaa-AG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 55007 | 0.72 | 0.824176 |
Target: 5'- uGGCGGcGcuggaguccaUGCGCGcGUCGGGCGCGUUUg -3' miRNA: 3'- -CCGUC-C----------ACGUGC-UAGCUCGUGUAAAg -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 109200 | 0.72 | 0.832971 |
Target: 5'- gGGCGGGUGC--GAUCGGGCAgAc--- -3' miRNA: 3'- -CCGUCCACGugCUAGCUCGUgUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 8725 | 0.71 | 0.848294 |
Target: 5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3' miRNA: 3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 57983 | 0.71 | 0.858126 |
Target: 5'- aGGCAGGaccgGCGCGGUgGcGGCGCAg--- -3' miRNA: 3'- -CCGUCCa---CGUGCUAgC-UCGUGUaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 32891 | 0.71 | 0.866074 |
Target: 5'- gGGCAcGGUGCGCGccgcgcgCGAGCGCc---- -3' miRNA: 3'- -CCGU-CCACGUGCua-----GCUCGUGuaaag -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 77699 | 0.71 | 0.873792 |
Target: 5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3' miRNA: 3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 59552 | 0.71 | 0.881273 |
Target: 5'- uGGCuGGUGCugGGccUgGAGCACuUUUUu -3' miRNA: 3'- -CCGuCCACGugCU--AgCUCGUGuAAAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 81821 | 0.71 | 0.882008 |
Target: 5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3' miRNA: 3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5' |
|||||||
6383 | 5' | -51.2 | NC_001847.1 | + | 17152 | 0.7 | 0.888513 |
Target: 5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3' miRNA: 3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home