miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6383 5' -51.2 NC_001847.1 + 67218 0.74 0.747741
Target:  5'- cGGCGGGcGCGCGGUCGAaCGCcgUg- -3'
miRNA:   3'- -CCGUCCaCGUGCUAGCUcGUGuaAag -5'
6383 5' -51.2 NC_001847.1 + 36183 0.68 0.963004
Target:  5'- cGGC-GGUGCGCGG-CGAGgcCGCGUa-- -3'
miRNA:   3'- -CCGuCCACGUGCUaGCUC--GUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 30236 0.67 0.969636
Target:  5'- gGGCcgAGGUGCGCGuGUCGcuGGCgGCGUUg- -3'
miRNA:   3'- -CCG--UCCACGUGC-UAGC--UCG-UGUAAag -5'
6383 5' -51.2 NC_001847.1 + 100883 0.66 0.989332
Target:  5'- cGGCAGGgGCGCGGccggCGGGagACGgggUCg -3'
miRNA:   3'- -CCGUCCaCGUGCUa---GCUCg-UGUaa-AG- -5'
6383 5' -51.2 NC_001847.1 + 77699 0.71 0.873792
Target:  5'- aGGCGGcGUGCGCGcgCGcGCugGUgcgCg -3'
miRNA:   3'- -CCGUC-CACGUGCuaGCuCGugUAaa-G- -5'
6383 5' -51.2 NC_001847.1 + 81821 0.71 0.882008
Target:  5'- cGGCGGGgcgcgccgucugucGCccgccgcacuggcgGCGAUCGAGCGCGcgUUCg -3'
miRNA:   3'- -CCGUCCa-------------CG--------------UGCUAGCUCGUGUa-AAG- -5'
6383 5' -51.2 NC_001847.1 + 20806 0.7 0.888513
Target:  5'- cGGCGGGUGCuuCGG-CG-GCGC-UUUCg -3'
miRNA:   3'- -CCGUCCACGu-GCUaGCuCGUGuAAAG- -5'
6383 5' -51.2 NC_001847.1 + 56617 0.7 0.888513
Target:  5'- aGGCcgAGGc-CGCGGUCGAGCGCGUc-- -3'
miRNA:   3'- -CCG--UCCacGUGCUAGCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 30336 0.7 0.902245
Target:  5'- cGGCGGGcUGgACGA-CGAGCACc---- -3'
miRNA:   3'- -CCGUCC-ACgUGCUaGCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 85776 0.68 0.946854
Target:  5'- gGGCAgcggccgaugcGGUGCGCGucgagggugCGGGCGCGUg-- -3'
miRNA:   3'- -CCGU-----------CCACGUGCua-------GCUCGUGUAaag -5'
6383 5' -51.2 NC_001847.1 + 106072 0.7 0.913734
Target:  5'- cGGCAGGggcgccggcgccGCGCGGccggCGAGCACGgcgCg -3'
miRNA:   3'- -CCGUCCa-----------CGUGCUa---GCUCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 14568 0.7 0.902245
Target:  5'- cGCGGGUGCugG--CGGGCGCGc--- -3'
miRNA:   3'- cCGUCCACGugCuaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 80201 0.73 0.757793
Target:  5'- gGGCGGGUGCGCcg-CGaAGCGCAgggCg -3'
miRNA:   3'- -CCGUCCACGUGcuaGC-UCGUGUaaaG- -5'
6383 5' -51.2 NC_001847.1 + 52288 0.7 0.914959
Target:  5'- cGGCuuuGuGUGCGCGAccgCGGGCGCGg--- -3'
miRNA:   3'- -CCGu--C-CACGUGCUa--GCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 8725 0.71 0.848294
Target:  5'- gGGCGGG-GCAUGugugugucaccCGAGCGCAUUUg -3'
miRNA:   3'- -CCGUCCaCGUGCua---------GCUCGUGUAAAg -5'
6383 5' -51.2 NC_001847.1 + 18638 0.7 0.902245
Target:  5'- aGGCagAGGUGCuCGG-CGAGCGCGa--- -3'
miRNA:   3'- -CCG--UCCACGuGCUaGCUCGUGUaaag -5'
6383 5' -51.2 NC_001847.1 + 23706 0.69 0.920927
Target:  5'- -aCGGG-GCGCGGUCG-GCGCAgaggUCg -3'
miRNA:   3'- ccGUCCaCGUGCUAGCuCGUGUaa--AG- -5'
6383 5' -51.2 NC_001847.1 + 68123 0.68 0.963004
Target:  5'- cGguGGU-CGCGggCGAGCGCGcgUCu -3'
miRNA:   3'- cCguCCAcGUGCuaGCUCGUGUaaAG- -5'
6383 5' -51.2 NC_001847.1 + 32891 0.71 0.866074
Target:  5'- gGGCAcGGUGCGCGccgcgcgCGAGCGCc---- -3'
miRNA:   3'- -CCGU-CCACGUGCua-----GCUCGUGuaaag -5'
6383 5' -51.2 NC_001847.1 + 17152 0.7 0.888513
Target:  5'- gGGCGGGUGgGCGGUUGGcGuCGCGUccUCg -3'
miRNA:   3'- -CCGUCCACgUGCUAGCU-C-GUGUAa-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.