Results 1 - 20 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6401 | 3' | -56.7 | NC_001847.1 | + | 88809 | 1.02 | 0.006341 |
Target: 5'- cGGACUACUGCCUU-CCUGGCGGUCGCg -3' miRNA: 3'- -CCUGAUGACGGAAcGGACCGCCAGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 45288 | 0.75 | 0.379021 |
Target: 5'- cGGCgaGCcgGCCUUGCagccGGCGGUCGCa -3' miRNA: 3'- cCUGa-UGa-CGGAACGga--CCGCCAGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 19586 | 0.74 | 0.412921 |
Target: 5'- cGGCccgUACUuaaGCgUUGCCgUGGCGGUCGCc -3' miRNA: 3'- cCUG---AUGA---CGgAACGG-ACCGCCAGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 35230 | 0.74 | 0.448629 |
Target: 5'- cGGACgUGCUGCaggcgGCC-GGCGGgcgCGCg -3' miRNA: 3'- -CCUG-AUGACGgaa--CGGaCCGCCa--GCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 43211 | 0.73 | 0.505203 |
Target: 5'- uGGAUUGCUcggcGCCgUUGCCcggUGGCGGUgggggCGCg -3' miRNA: 3'- -CCUGAUGA----CGG-AACGG---ACCGCCA-----GCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 50087 | 0.72 | 0.514936 |
Target: 5'- cGGGCgcggccaagGCUGCCgcGCCgGGCGG-CGUa -3' miRNA: 3'- -CCUGa--------UGACGGaaCGGaCCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 76869 | 0.72 | 0.524745 |
Target: 5'- aGGGCgccCUGCCgUGCCcgGGUGG-CGCc -3' miRNA: 3'- -CCUGau-GACGGaACGGa-CCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 69309 | 0.72 | 0.534624 |
Target: 5'- cGGACcgGCUGCCUUuugggcgcggGCCucgggcgcugcUGGCGG-CGCu -3' miRNA: 3'- -CCUGa-UGACGGAA----------CGG-----------ACCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 44655 | 0.71 | 0.564627 |
Target: 5'- aGGCUGCUGCCccGCCUgcaccgugaccGGCGaGcCGCg -3' miRNA: 3'- cCUGAUGACGGaaCGGA-----------CCGC-CaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 70421 | 0.71 | 0.615486 |
Target: 5'- uGGGCUGCacgGCCgcGUCggUGGCGGUgcCGCg -3' miRNA: 3'- -CCUGAUGa--CGGaaCGG--ACCGCCA--GCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 101450 | 0.7 | 0.625725 |
Target: 5'- gGGGCgcggaaACUGCCgccgcgcgGCCgcaagGGCGG-CGCg -3' miRNA: 3'- -CCUGa-----UGACGGaa------CGGa----CCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 87692 | 0.7 | 0.632895 |
Target: 5'- gGGGCUGCUGCggcGCCgcggcGGCGGcgaagccgacgacgUCGCa -3' miRNA: 3'- -CCUGAUGACGgaaCGGa----CCGCC--------------AGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 116143 | 0.7 | 0.635968 |
Target: 5'- gGGGCgcGCgGCCcgagGCgCUGGCGGcCGCg -3' miRNA: 3'- -CCUGa-UGaCGGaa--CG-GACCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 69478 | 0.7 | 0.656438 |
Target: 5'- gGGGCUcCUGCUggccgGgCUGGCGG-CGUa -3' miRNA: 3'- -CCUGAuGACGGaa---CgGACCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 78279 | 0.7 | 0.656438 |
Target: 5'- uGGcCUGCUcGCCUcUGCgaGGCGGU-GCu -3' miRNA: 3'- -CCuGAUGA-CGGA-ACGgaCCGCCAgCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 31142 | 0.7 | 0.656438 |
Target: 5'- cGACgaGCUGCCg-GCCgcGGCGGUgGCc -3' miRNA: 3'- cCUGa-UGACGGaaCGGa-CCGCCAgCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 61439 | 0.7 | 0.656438 |
Target: 5'- cGGCcGCgccGCCgggcgcgGCgaGGCGGUCGCg -3' miRNA: 3'- cCUGaUGa--CGGaa-----CGgaCCGCCAGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 133955 | 0.7 | 0.656438 |
Target: 5'- cGACgaGCUGCCg-GCCgcGGCGGUgGCc -3' miRNA: 3'- cCUGa-UGACGGaaCGGa-CCGCCAgCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 14131 | 0.7 | 0.666648 |
Target: 5'- cGGGCgauggGCgggGCCcgcGCCUgGGCGGcCGCu -3' miRNA: 3'- -CCUGa----UGa--CGGaa-CGGA-CCGCCaGCG- -5' |
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6401 | 3' | -56.7 | NC_001847.1 | + | 43427 | 0.7 | 0.666648 |
Target: 5'- -cGCUGCUGCUgcugGCC-GGC-GUCGCg -3' miRNA: 3'- ccUGAUGACGGaa--CGGaCCGcCAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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