miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 3' -56.7 NC_001847.1 + 559 0.69 0.70712
Target:  5'- gGGGCacgAUUGaCC-UGCCUGGCGG-CGa -3'
miRNA:   3'- -CCUGa--UGAC-GGaACGGACCGCCaGCg -5'
6401 3' -56.7 NC_001847.1 + 2558 0.69 0.72701
Target:  5'- cGGCggGCUGUCUUcggcgcgggcGCCUGcGCGGcCGCc -3'
miRNA:   3'- cCUGa-UGACGGAA----------CGGAC-CGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 5573 0.67 0.811394
Target:  5'- cGACg---GCaaaUGCCUGGUGGcCGCg -3'
miRNA:   3'- cCUGaugaCGga-ACGGACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 5729 0.68 0.736837
Target:  5'- aGGGCUuacCUGCCc-GCggGGCGGUuCGCc -3'
miRNA:   3'- -CCUGAu--GACGGaaCGgaCCGCCA-GCG- -5'
6401 3' -56.7 NC_001847.1 + 8460 0.66 0.852995
Target:  5'- cGGAg-GCggcGCCggGCCgggGGCGG-CGCu -3'
miRNA:   3'- -CCUgaUGa--CGGaaCGGa--CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 10809 0.68 0.750439
Target:  5'- uGGGCUACUGCCgcgcgcUGCugcagcaccugcgcgCgacGGCGG-CGCg -3'
miRNA:   3'- -CCUGAUGACGGa-----ACG---------------Ga--CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 13129 0.66 0.84825
Target:  5'- cGGGCggcgccgcgccgcCUGCCgcgGCC-GGCGGUUGg -3'
miRNA:   3'- -CCUGau-----------GACGGaa-CGGaCCGCCAGCg -5'
6401 3' -56.7 NC_001847.1 + 14131 0.7 0.666648
Target:  5'- cGGGCgauggGCgggGCCcgcGCCUgGGCGGcCGCu -3'
miRNA:   3'- -CCUGa----UGa--CGGaa-CGGA-CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 14150 0.67 0.828579
Target:  5'- cGGCUGCgcaGCggcgGCCggGGCGGcCGCg -3'
miRNA:   3'- cCUGAUGa--CGgaa-CGGa-CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 15449 0.67 0.828579
Target:  5'- uGGcGCUGCUGaaaaGCgUGGCGG-CGCa -3'
miRNA:   3'- -CC-UGAUGACggaaCGgACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 16786 0.68 0.784417
Target:  5'- cGGGCgagGC-GUCguaCgUGGCGGUCGCg -3'
miRNA:   3'- -CCUGa--UGaCGGaacGgACCGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 17908 0.67 0.828579
Target:  5'- aGGGCgacgGCgGCCaaggUGCCgguccgGGCGGcaggcaugaUCGCa -3'
miRNA:   3'- -CCUGa---UGaCGGa---ACGGa-----CCGCC---------AGCG- -5'
6401 3' -56.7 NC_001847.1 + 18194 0.67 0.836906
Target:  5'- cGGACgcgcgGCgagGUCUcgGgCUGGCGGUCu- -3'
miRNA:   3'- -CCUGa----UGa--CGGAa-CgGACCGCCAGcg -5'
6401 3' -56.7 NC_001847.1 + 18332 0.66 0.852995
Target:  5'- cGGAgCaGCUGCCggGCgCagucGCGGUCGCc -3'
miRNA:   3'- -CCU-GaUGACGGaaCG-Gac--CGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 18865 0.68 0.756207
Target:  5'- gGGGCacGCUGCCUcGCC-GaGCGG-CGCc -3'
miRNA:   3'- -CCUGa-UGACGGAaCGGaC-CGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 19586 0.74 0.412921
Target:  5'- cGGCccgUACUuaaGCgUUGCCgUGGCGGUCGCc -3'
miRNA:   3'- cCUG---AUGA---CGgAACGG-ACCGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 25954 0.66 0.87561
Target:  5'- cGGCUAggGCCaaaggggGCCgcgGGCGGUCa- -3'
miRNA:   3'- cCUGAUgaCGGaa-----CGGa--CCGCCAGcg -5'
6401 3' -56.7 NC_001847.1 + 27679 0.66 0.860742
Target:  5'- cGGAUUcgaGCUGCCUUuauagcGCC-GGCGcaCGCg -3'
miRNA:   3'- -CCUGA---UGACGGAA------CGGaCCGCcaGCG- -5'
6401 3' -56.7 NC_001847.1 + 27896 0.69 0.717101
Target:  5'- cGGAgUGC-GCCgagGCCgagggGGCGGagggCGCg -3'
miRNA:   3'- -CCUgAUGaCGGaa-CGGa----CCGCCa---GCG- -5'
6401 3' -56.7 NC_001847.1 + 27932 0.68 0.762887
Target:  5'- aGGACgcggACagGCCUggGCCgcggcgcgcgcgcucGCGGUCGCg -3'
miRNA:   3'- -CCUGa---UGa-CGGAa-CGGac-------------CGCCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.