miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6401 3' -56.7 NC_001847.1 + 45288 0.75 0.379021
Target:  5'- cGGCgaGCcgGCCUUGCagccGGCGGUCGCa -3'
miRNA:   3'- cCUGa-UGa-CGGAACGga--CCGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 88284 0.69 0.697074
Target:  5'- cGGCUuugcACUgGCCUUgcGCCgcgggGGCGGUCGa -3'
miRNA:   3'- cCUGA----UGA-CGGAA--CGGa----CCGCCAGCg -5'
6401 3' -56.7 NC_001847.1 + 76886 0.69 0.70712
Target:  5'- uGGAggcCUGCCUgacgGag-GGCGGUCGCg -3'
miRNA:   3'- -CCUgauGACGGAa---CggaCCGCCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 128767 0.66 0.87561
Target:  5'- cGGCUAggGCCaaaggggGCCgcgGGCGGUCa- -3'
miRNA:   3'- cCUGAUgaCGGaa-----CGGa--CCGCCAGcg -5'
6401 3' -56.7 NC_001847.1 + 69309 0.72 0.534624
Target:  5'- cGGACcgGCUGCCUUuugggcgcggGCCucgggcgcugcUGGCGG-CGCu -3'
miRNA:   3'- -CCUGa-UGACGGAA----------CGG-----------ACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 44655 0.71 0.564627
Target:  5'- aGGCUGCUGCCccGCCUgcaccgugaccGGCGaGcCGCg -3'
miRNA:   3'- cCUGAUGACGGaaCGGA-----------CCGC-CaGCG- -5'
6401 3' -56.7 NC_001847.1 + 101450 0.7 0.625725
Target:  5'- gGGGCgcggaaACUGCCgccgcgcgGCCgcaagGGCGG-CGCg -3'
miRNA:   3'- -CCUGa-----UGACGGaa------CGGa----CCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 87692 0.7 0.632895
Target:  5'- gGGGCUGCUGCggcGCCgcggcGGCGGcgaagccgacgacgUCGCa -3'
miRNA:   3'- -CCUGAUGACGgaaCGGa----CCGCC--------------AGCG- -5'
6401 3' -56.7 NC_001847.1 + 133955 0.7 0.656438
Target:  5'- cGACgaGCUGCCg-GCCgcGGCGGUgGCc -3'
miRNA:   3'- cCUGa-UGACGGaaCGGa-CCGCCAgCG- -5'
6401 3' -56.7 NC_001847.1 + 53792 0.69 0.697074
Target:  5'- uGGGCcaguacCUGCCgcacgUGCaaGGCGuGUCGCg -3'
miRNA:   3'- -CCUGau----GACGGa----ACGgaCCGC-CAGCG- -5'
6401 3' -56.7 NC_001847.1 + 43427 0.7 0.666648
Target:  5'- -cGCUGCUGCUgcugGCC-GGC-GUCGCg -3'
miRNA:   3'- ccUGAUGACGGaa--CGGaCCGcCAGCG- -5'
6401 3' -56.7 NC_001847.1 + 78279 0.7 0.656438
Target:  5'- uGGcCUGCUcGCCUcUGCgaGGCGGU-GCu -3'
miRNA:   3'- -CCuGAUGA-CGGA-ACGgaCCGCCAgCG- -5'
6401 3' -56.7 NC_001847.1 + 35230 0.74 0.448629
Target:  5'- cGGACgUGCUGCaggcgGCC-GGCGGgcgCGCg -3'
miRNA:   3'- -CCUG-AUGACGgaa--CGGaCCGCCa--GCG- -5'
6401 3' -56.7 NC_001847.1 + 130709 0.7 0.666648
Target:  5'- cGGAgUGC-GCCgagGCCgagggGGCGGagGCg -3'
miRNA:   3'- -CCUgAUGaCGGaa-CGGa----CCGCCagCG- -5'
6401 3' -56.7 NC_001847.1 + 43211 0.73 0.505203
Target:  5'- uGGAUUGCUcggcGCCgUUGCCcggUGGCGGUgggggCGCg -3'
miRNA:   3'- -CCUGAUGA----CGG-AACGG---ACCGCCA-----GCG- -5'
6401 3' -56.7 NC_001847.1 + 69478 0.7 0.656438
Target:  5'- gGGGCUcCUGCUggccgGgCUGGCGG-CGUa -3'
miRNA:   3'- -CCUGAuGACGGaa---CgGACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 36211 0.69 0.697074
Target:  5'- gGGGCUGCgcGCCcu-CCUGGCGGccuucgacgCGCa -3'
miRNA:   3'- -CCUGAUGa-CGGaacGGACCGCCa--------GCG- -5'
6401 3' -56.7 NC_001847.1 + 133161 0.69 0.697074
Target:  5'- cGACccGCUGCCcggggagGCgCUGGCGG-CGCc -3'
miRNA:   3'- cCUGa-UGACGGaa-----CG-GACCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 50087 0.72 0.514936
Target:  5'- cGGGCgcggccaagGCUGCCgcGCCgGGCGG-CGUa -3'
miRNA:   3'- -CCUGa--------UGACGGaaCGGaCCGCCaGCG- -5'
6401 3' -56.7 NC_001847.1 + 70421 0.71 0.615486
Target:  5'- uGGGCUGCacgGCCgcGUCggUGGCGGUgcCGCg -3'
miRNA:   3'- -CCUGAUGa--CGGaaCGG--ACCGCCA--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.