miRNA display CGI


Results 1 - 20 of 165 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 3' -63.9 NC_001847.1 + 87929 1.11 0.000372
Target:  5'- cCGUGGCCGAGGAGGCCCUGCGGGAGCg -3'
miRNA:   3'- -GCACCGGCUCCUCCGGGACGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 52680 0.81 0.054521
Target:  5'- cCGUGGCCGGGGccGGGCCCgccGCGccuGGAGCc -3'
miRNA:   3'- -GCACCGGCUCC--UCCGGGa--CGC---CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 32966 0.78 0.090918
Target:  5'- --aGGCCGGGGAGGCCagagGCGccGGGGCg -3'
miRNA:   3'- gcaCCGGCUCCUCCGGga--CGC--CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 78393 0.77 0.108436
Target:  5'- -aUGGCCGAGGAccccGCCgCUGCGGGcGCg -3'
miRNA:   3'- gcACCGGCUCCUc---CGG-GACGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 29547 0.76 0.13562
Target:  5'- uCGcGGCCcuGGAGGCCgCcgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGcuCCUCCGG-Ga-CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 32194 0.76 0.13562
Target:  5'- --cGGCCGGGGcccgAGGCCCgcggGCGGG-GCc -3'
miRNA:   3'- gcaCCGGCUCC----UCCGGGa---CGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 132360 0.76 0.13562
Target:  5'- uCGcGGCCcuGGAGGCCgCcgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGcuCCUCCGG-Ga-CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 135007 0.76 0.13562
Target:  5'- --cGGCCGGGGcccgAGGCCCgcggGCGGG-GCc -3'
miRNA:   3'- gcaCCGGCUCC----UCCGGGa---CGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 94852 0.75 0.14246
Target:  5'- -cUGcGCCGAGGGGGaCCUUG-GGGGGCg -3'
miRNA:   3'- gcAC-CGGCUCCUCC-GGGACgCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 76406 0.75 0.149614
Target:  5'- cCGggGGCCGcggcGGGGGCaCCccgcgGCGGGAGCg -3'
miRNA:   3'- -GCa-CCGGCu---CCUCCG-GGa----CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 13869 0.75 0.157093
Target:  5'- gGUGGCgaGGGGGGGCgCCUuugGcCGGGAGCc -3'
miRNA:   3'- gCACCGg-CUCCUCCG-GGA---C-GCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 79543 0.75 0.157093
Target:  5'- uCGgGGCCGGGGGGGCUggggCUcGCGGGGGg -3'
miRNA:   3'- -GCaCCGGCUCCUCCGG----GA-CGCCCUCg -5'
6403 3' -63.9 NC_001847.1 + 90749 0.74 0.168946
Target:  5'- gCGUGGCCG----GGCCCcgggaGCGGGAGCg -3'
miRNA:   3'- -GCACCGGCuccuCCGGGa----CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 10855 0.74 0.171824
Target:  5'- gCGUGGCCGAGGcgcggcgggcgcGGGCgcccaggcagaccgCCUGCGGcAGCu -3'
miRNA:   3'- -GCACCGGCUCC------------UCCG--------------GGACGCCcUCG- -5'
6403 3' -63.9 NC_001847.1 + 14385 0.74 0.190484
Target:  5'- cCGcGGCCGuGGuGGCCUUGCaGGAGg -3'
miRNA:   3'- -GCaCCGGCuCCuCCGGGACGcCCUCg -5'
6403 3' -63.9 NC_001847.1 + 98882 0.73 0.195071
Target:  5'- gCGUGcGCCuGGGcGGCCCagGcCGGGAGCu -3'
miRNA:   3'- -GCAC-CGGcUCCuCCGGGa-C-GCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 7251 0.73 0.195071
Target:  5'- gGUGGCUGuGcGGGCgCgGCGGGGGCa -3'
miRNA:   3'- gCACCGGCuCcUCCGgGaCGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 54531 0.73 0.204536
Target:  5'- gCGgGGCCGuccGGGGGCgCagacgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGCu--CCUCCGgGa----CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 83240 0.73 0.214397
Target:  5'- cCGcGGCCGGGGcGGCggCCgaaagcgcgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGCUCCuCCG--GGa--------CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 29981 0.73 0.214397
Target:  5'- aCGcGGCCGGGccGGCgCgGCGGGAGCc -3'
miRNA:   3'- -GCaCCGGCUCcuCCGgGaCGCCCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.