miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 3' -63.9 NC_001847.1 + 155 0.67 0.457116
Target:  5'- --cGGCCGGGGggccgGGGUUCUGCGucuuggcccccGGGGCc -3'
miRNA:   3'- gcaCCGGCUCC-----UCCGGGACGC-----------CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 2076 0.69 0.36632
Target:  5'- gGUGGCggCGAGcgccccgcGGGGCCCgcgcgGCGGcGGGCc -3'
miRNA:   3'- gCACCG--GCUC--------CUCCGGGa----CGCC-CUCG- -5'
6403 3' -63.9 NC_001847.1 + 2298 0.66 0.558657
Target:  5'- gCGgGGCCGccGGGcggcauGGGCCCcagcacgcggGCGGGcAGCg -3'
miRNA:   3'- -GCaCCGGC--UCC------UCCGGGa---------CGCCC-UCG- -5'
6403 3' -63.9 NC_001847.1 + 3946 0.67 0.448362
Target:  5'- cCGcGGCgGGGGGGGCgCCgucuccgGCGGcGAGg -3'
miRNA:   3'- -GCaCCGgCUCCUCCG-GGa------CGCC-CUCg -5'
6403 3' -63.9 NC_001847.1 + 3984 0.71 0.288738
Target:  5'- cCGggGGCCGGGcGcgcGGCCCcGCGGG-GCg -3'
miRNA:   3'- -GCa-CCGGCUC-Cu--CCGGGaCGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 4966 0.67 0.457116
Target:  5'- gCGcGcGCCGGGGGGGCagCUG-GGGuGCg -3'
miRNA:   3'- -GCaC-CGGCUCCUCCGg-GACgCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 5363 0.66 0.530149
Target:  5'- gCGcGGCCGGGcccAGGCUCcgGCGGuccGAGCg -3'
miRNA:   3'- -GCaCCGGCUCc--UCCGGGa-CGCC---CUCG- -5'
6403 3' -63.9 NC_001847.1 + 5717 0.66 0.539597
Target:  5'- gGUGcGCCuGGGAGGgcuuaCCUGCccgcGGGGCg -3'
miRNA:   3'- gCAC-CGGcUCCUCCg----GGACGc---CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 6041 0.68 0.42267
Target:  5'- -uUGGC--GGGAGGaCCCcgGCGGuGAGCa -3'
miRNA:   3'- gcACCGgcUCCUCC-GGGa-CGCC-CUCG- -5'
6403 3' -63.9 NC_001847.1 + 7251 0.73 0.195071
Target:  5'- gGUGGCUGuGcGGGCgCgGCGGGGGCa -3'
miRNA:   3'- gCACCGGCuCcUCCGgGaCGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 8471 0.71 0.257978
Target:  5'- cCG-GGCCGGGGGcGGCgCUcgGcCGGGGGCg -3'
miRNA:   3'- -GCaCCGGCUCCU-CCGgGA--C-GCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 8628 0.67 0.457116
Target:  5'- ---cGCCGGGGGagcGGCCgCUGCGGacucGGGCg -3'
miRNA:   3'- gcacCGGCUCCU---CCGG-GACGCC----CUCG- -5'
6403 3' -63.9 NC_001847.1 + 8977 0.71 0.295225
Target:  5'- uCG-GGCCGGGGgcGGGCagaCggggGUGGGGGCu -3'
miRNA:   3'- -GCaCCGGCUCC--UCCGg--Ga---CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 9741 0.67 0.474895
Target:  5'- aCGcGaCCGGGcGGGCCCUGCcccGGGGCg -3'
miRNA:   3'- -GCaCcGGCUCcUCCGGGACGc--CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 10064 0.7 0.316054
Target:  5'- -uUGGCCGcGcGGGCCCagcgccccgccgcgcGCGGGAGCa -3'
miRNA:   3'- gcACCGGCuCcUCCGGGa--------------CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 10855 0.74 0.171824
Target:  5'- gCGUGGCCGAGGcgcggcgggcgcGGGCgcccaggcagaccgCCUGCGGcAGCu -3'
miRNA:   3'- -GCACCGGCUCC------------UCCG--------------GGACGCCcUCG- -5'
6403 3' -63.9 NC_001847.1 + 11289 0.67 0.448362
Target:  5'- --gGGCCGGGGgucucgGGGCCUcaggGCcGGGGCa -3'
miRNA:   3'- gcaCCGGCUCC------UCCGGGa---CGcCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 11324 0.7 0.308539
Target:  5'- --aGGCCGGcGGGcggcuGGCgCCggaGCGGGAGCa -3'
miRNA:   3'- gcaCCGGCU-CCU-----CCG-GGa--CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 11814 0.67 0.487544
Target:  5'- gCGUGGCguuugCGAGGccucccucuggcguaAGgccucuggcgccGCCCUGCGGGcGGCg -3'
miRNA:   3'- -GCACCG-----GCUCC---------------UC------------CGGGACGCCC-UCG- -5'
6403 3' -63.9 NC_001847.1 + 13869 0.75 0.157093
Target:  5'- gGUGGCgaGGGGGGGCgCCUuugGcCGGGAGCc -3'
miRNA:   3'- gCACCGg-CUCCUCCG-GGA---C-GCCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.