miRNA display CGI


Results 1 - 20 of 165 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 3' -63.9 NC_001847.1 + 52680 0.81 0.054521
Target:  5'- cCGUGGCCGGGGccGGGCCCgccGCGccuGGAGCc -3'
miRNA:   3'- -GCACCGGCUCC--UCCGGGa--CGC---CCUCG- -5'
6403 3' -63.9 NC_001847.1 + 66266 0.71 0.263908
Target:  5'- --gGGCCGGGGAGGCCuCUuCGGcccGGCg -3'
miRNA:   3'- gcaCCGGCUCCUCCGG-GAcGCCc--UCG- -5'
6403 3' -63.9 NC_001847.1 + 50655 0.71 0.282363
Target:  5'- uGUGGCCagcacgcugGAGGGcgacGuGCCCUGCGGGcuguGCu -3'
miRNA:   3'- gCACCGG---------CUCCU----C-CGGGACGCCCu---CG- -5'
6403 3' -63.9 NC_001847.1 + 105111 0.66 0.558657
Target:  5'- gCGgGGCCGccGGGcggcauGGGCCCcagcacgcggGCGGGcAGCg -3'
miRNA:   3'- -GCaCCGGC--UCC------UCCGGGa---------CGCCC-UCG- -5'
6403 3' -63.9 NC_001847.1 + 76406 0.75 0.149614
Target:  5'- cCGggGGCCGcggcGGGGGCaCCccgcgGCGGGAGCg -3'
miRNA:   3'- -GCa-CCGGCu---CCUCCG-GGa----CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 10855 0.74 0.171824
Target:  5'- gCGUGGCCGAGGcgcggcgggcgcGGGCgcccaggcagaccgCCUGCGGcAGCu -3'
miRNA:   3'- -GCACCGGCUCC------------UCCG--------------GGACGCCcUCG- -5'
6403 3' -63.9 NC_001847.1 + 7251 0.73 0.195071
Target:  5'- gGUGGCUGuGcGGGCgCgGCGGGGGCa -3'
miRNA:   3'- gCACCGGCuCcUCCGgGaCGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 54531 0.73 0.204536
Target:  5'- gCGgGGCCGuccGGGGGCgCagacgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGCu--CCUCCGgGa----CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 102677 0.73 0.219478
Target:  5'- --aGGgCGGGGGGGCgggGCGGGGGCa -3'
miRNA:   3'- gcaCCgGCUCCUCCGggaCGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 111284 0.71 0.257978
Target:  5'- cCG-GGCCGGGGGcGGCgCUcgGcCGGGGGCg -3'
miRNA:   3'- -GCaCCGGCUCCU-CCGgGA--C-GCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 134389 0.72 0.22995
Target:  5'- gCGgcgGGCCGgccucgcccuaGGGGGGCCC-GCGGGAa- -3'
miRNA:   3'- -GCa--CCGGC-----------UCCUCCGGGaCGCCCUcg -5'
6403 3' -63.9 NC_001847.1 + 132794 0.73 0.214397
Target:  5'- aCGcGGCCGGGccGGCgCgGCGGGAGCc -3'
miRNA:   3'- -GCaCCGGCUCcuCCGgGaCGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 78393 0.77 0.108436
Target:  5'- -aUGGCCGAGGAccccGCCgCUGCGGGcGCg -3'
miRNA:   3'- gcACCGGCUCCUc---CGG-GACGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 37601 0.71 0.25622
Target:  5'- --cGGCCGGGGGccGGCCCgcGCucuuuugcccgacgGGGAGCa -3'
miRNA:   3'- gcaCCGGCUCCU--CCGGGa-CG--------------CCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 135007 0.76 0.13562
Target:  5'- --cGGCCGGGGcccgAGGCCCgcggGCGGG-GCc -3'
miRNA:   3'- gcaCCGGCUCC----UCCGGGa---CGCCCuCG- -5'
6403 3' -63.9 NC_001847.1 + 83240 0.73 0.214397
Target:  5'- cCGcGGCCGGGGcGGCggCCgaaagcgcgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGCUCCuCCG--GGa--------CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 43234 0.71 0.257978
Target:  5'- gGUGGCgGuGGGGGCgC-GCGGGcGGCg -3'
miRNA:   3'- gCACCGgCuCCUCCGgGaCGCCC-UCG- -5'
6403 3' -63.9 NC_001847.1 + 64237 0.71 0.2761
Target:  5'- -aUGGCgGGGGAGGCCacgGCGGGc-- -3'
miRNA:   3'- gcACCGgCUCCUCCGGga-CGCCCucg -5'
6403 3' -63.9 NC_001847.1 + 132360 0.76 0.13562
Target:  5'- uCGcGGCCcuGGAGGCCgCcgGCGGGGGCg -3'
miRNA:   3'- -GCaCCGGcuCCUCCGG-Ga-CGCCCUCG- -5'
6403 3' -63.9 NC_001847.1 + 14385 0.74 0.190484
Target:  5'- cCGcGGCCGuGGuGGCCUUGCaGGAGg -3'
miRNA:   3'- -GCaCCGGCuCCuCCGGGACGcCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.