miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 5' -53.5 NC_001847.1 + 87968 1.09 0.004211
Target:  5'- uGGACUACAAGGACAUCCCUCGGCACUu -3'
miRNA:   3'- -CCUGAUGUUCCUGUAGGGAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 112059 0.81 0.27943
Target:  5'- cGGGCUACGuagAGGGCG-CCCUCGGCGa- -3'
miRNA:   3'- -CCUGAUGU---UCCUGUaGGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 50987 0.77 0.448752
Target:  5'- aGGGCUACGAGG---UCCC-CGGCGCg -3'
miRNA:   3'- -CCUGAUGUUCCuguAGGGaGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 56364 0.72 0.733091
Target:  5'- cGGGC-GCGGGcGGCAcgaCCUCGGCGCUc -3'
miRNA:   3'- -CCUGaUGUUC-CUGUag-GGAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 38481 0.71 0.762721
Target:  5'- aGGAUagccuCGAGGACGUCgCCggggggCGGCGCg -3'
miRNA:   3'- -CCUGau---GUUCCUGUAG-GGa-----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 38117 0.71 0.772369
Target:  5'- aGACUACGAGGACGcgcugCCCcccgCGGCcaGCg -3'
miRNA:   3'- cCUGAUGUUCCUGUa----GGGa---GCCG--UGa -5'
6403 5' -53.5 NC_001847.1 + 66618 0.71 0.781885
Target:  5'- cGACgGCGAGGACgAUCCCgaCGGCGg- -3'
miRNA:   3'- cCUGaUGUUCCUG-UAGGGa-GCCGUga -5'
6403 5' -53.5 NC_001847.1 + 54028 0.71 0.781885
Target:  5'- -aGCUGCAGuucuGGAUGUCCUcgUCGGCGCg -3'
miRNA:   3'- ccUGAUGUU----CCUGUAGGG--AGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 70701 0.71 0.791261
Target:  5'- cGGGCggcgGCGGGGGCG-CCCgCGGCGa- -3'
miRNA:   3'- -CCUGa---UGUUCCUGUaGGGaGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 28083 0.7 0.800488
Target:  5'- gGGACUGaggcgGGGGGCGgcggugCCCUCGGgGCc -3'
miRNA:   3'- -CCUGAUg----UUCCUGUa-----GGGAGCCgUGa -5'
6403 5' -53.5 NC_001847.1 + 130896 0.7 0.800488
Target:  5'- gGGACUGaggcgGGGGGCGgcggugCCCUCGGgGCc -3'
miRNA:   3'- -CCUGAUg----UUCCUGUa-----GGGAGCCgUGa -5'
6403 5' -53.5 NC_001847.1 + 27526 0.7 0.818454
Target:  5'- cGGCgGCGGGGACG-CCCgagaacggCGGCGCg -3'
miRNA:   3'- cCUGaUGUUCCUGUaGGGa-------GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 51530 0.7 0.827176
Target:  5'- cGGCagGCGGGGGCGgcgCCCaggcgUCGGCGCa -3'
miRNA:   3'- cCUGa-UGUUCCUGUa--GGG-----AGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 127360 0.7 0.827176
Target:  5'- gGGGCgGCGGGGccCGagCCUCGGCACc -3'
miRNA:   3'- -CCUGaUGUUCCu-GUagGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 76409 0.7 0.835712
Target:  5'- gGGGCcgcgGCGGGGGCAcCCCgCGGCGg- -3'
miRNA:   3'- -CCUGa---UGUUCCUGUaGGGaGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 133790 0.69 0.844055
Target:  5'- cGGGC-GCAAGGACAUggCCgCgcagggcgCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUCCUGUA--GG-Ga-------GCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 30977 0.69 0.844055
Target:  5'- cGGGC-GCAAGGACAUggCCgCgcagggcgCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUCCUGUA--GG-Ga-------GCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 35967 0.69 0.852196
Target:  5'- aGGACcACGAGGGCG-CCaa-GGCGCg -3'
miRNA:   3'- -CCUGaUGUUCCUGUaGGgagCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 77538 0.69 0.875343
Target:  5'- cGAgcGCGAGGGCGUggcgcaCCCUCGuGCGCUu -3'
miRNA:   3'- cCUgaUGUUCCUGUA------GGGAGC-CGUGA- -5'
6403 5' -53.5 NC_001847.1 + 100483 0.69 0.875343
Target:  5'- -cGCUGCGcGGcCGccCCCUCGGCGCg -3'
miRNA:   3'- ccUGAUGUuCCuGUa-GGGAGCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.