miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 5' -53.5 NC_001847.1 + 7190 0.66 0.958842
Target:  5'- aGGAUUugGAGcGCGUCC-UCGaGCGCg -3'
miRNA:   3'- -CCUGAugUUCcUGUAGGgAGC-CGUGa -5'
6403 5' -53.5 NC_001847.1 + 14078 0.67 0.941994
Target:  5'- uGGGCcGCucguGGACAUCgCggaGGCGCUg -3'
miRNA:   3'- -CCUGaUGuu--CCUGUAGgGag-CCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 15399 0.68 0.882613
Target:  5'- gGGGCUgggGCcGGGuuuCGgcucgCCCUCGGCGCc -3'
miRNA:   3'- -CCUGA---UGuUCCu--GUa----GGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 16985 0.66 0.954989
Target:  5'- gGGGC-ACcgucAGGACGUCCUUggcaaCGGCGCc -3'
miRNA:   3'- -CCUGaUGu---UCCUGUAGGGA-----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 18080 0.67 0.937172
Target:  5'- aGGGCggagGCGAGGGCGaggcuuccgccUCCUCGGCGa- -3'
miRNA:   3'- -CCUGa---UGUUCCUGUa----------GGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 18194 0.66 0.946569
Target:  5'- cGGACgcgcgGCGAGGuCucgggcuggcgGUCUCUCGGCGg- -3'
miRNA:   3'- -CCUGa----UGUUCCuG-----------UAGGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 18982 0.66 0.96211
Target:  5'- cGGAUaaUGCGAaaguuuagcgcacGGGCGgcgCCCUCGGC-CUc -3'
miRNA:   3'- -CCUG--AUGUU-------------CCUGUa--GGGAGCCGuGA- -5'
6403 5' -53.5 NC_001847.1 + 27526 0.7 0.818454
Target:  5'- cGGCgGCGGGGACG-CCCgagaacggCGGCGCg -3'
miRNA:   3'- cCUGaUGUUCCUGUaGGGa-------GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 27713 0.66 0.954989
Target:  5'- cGGCggggGCAAGGGCGUCag-CGGCGg- -3'
miRNA:   3'- cCUGa---UGUUCCUGUAGggaGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 28083 0.7 0.800488
Target:  5'- gGGACUGaggcgGGGGGCGgcggugCCCUCGGgGCc -3'
miRNA:   3'- -CCUGAUg----UUCCUGUa-----GGGAGCCgUGa -5'
6403 5' -53.5 NC_001847.1 + 30344 0.66 0.945222
Target:  5'- uGGACgACGAGcaccgcgcguugcuGGCGggCCaCUCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUC--------------CUGUa-GG-GAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 30696 0.67 0.926781
Target:  5'- gGGAg-ACGAGGGCAg-CC-CGGCGCUc -3'
miRNA:   3'- -CCUgaUGUUCCUGUagGGaGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 30977 0.69 0.844055
Target:  5'- cGGGC-GCAAGGACAUggCCgCgcagggcgCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUCCUGUA--GG-Ga-------GCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 32035 0.66 0.950899
Target:  5'- gGGGC-GCGGGGACGgcgCCCgcgcgggcUCGGCGg- -3'
miRNA:   3'- -CCUGaUGUUCCUGUa--GGG--------AGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 32529 0.68 0.896449
Target:  5'- cGGCUGucgGAGGcgaugcgcgcGCAgCCCUCGGCGCUg -3'
miRNA:   3'- cCUGAUg--UUCC----------UGUaGGGAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 35967 0.69 0.852196
Target:  5'- aGGACcACGAGGGCG-CCaa-GGCGCg -3'
miRNA:   3'- -CCUGaUGUUCCUGUaGGgagCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 38117 0.71 0.772369
Target:  5'- aGACUACGAGGACGcgcugCCCcccgCGGCcaGCg -3'
miRNA:   3'- cCUGAUGUUCCUGUa----GGGa---GCCG--UGa -5'
6403 5' -53.5 NC_001847.1 + 38481 0.71 0.762721
Target:  5'- aGGAUagccuCGAGGACGUCgCCggggggCGGCGCg -3'
miRNA:   3'- -CCUGau---GUUCCUGUAG-GGa-----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 45148 0.66 0.950899
Target:  5'- --uCUGCGGGGuGCAgCCCcgCGGCGCg -3'
miRNA:   3'- ccuGAUGUUCC-UGUaGGGa-GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 45432 0.68 0.909323
Target:  5'- aGGCUugAgcccAGGGCG-CCCgucgCGGCGCg -3'
miRNA:   3'- cCUGAugU----UCCUGUaGGGa---GCCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.