miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6403 5' -53.5 NC_001847.1 + 38117 0.71 0.772369
Target:  5'- aGACUACGAGGACGcgcugCCCcccgCGGCcaGCg -3'
miRNA:   3'- cCUGAUGUUCCUGUa----GGGa---GCCG--UGa -5'
6403 5' -53.5 NC_001847.1 + 18194 0.66 0.946569
Target:  5'- cGGACgcgcgGCGAGGuCucgggcuggcgGUCUCUCGGCGg- -3'
miRNA:   3'- -CCUGa----UGUUCCuG-----------UAGGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 83768 0.66 0.946569
Target:  5'- gGGACaccgGCGAGG-CAgCCCUCGaaGCGCc -3'
miRNA:   3'- -CCUGa---UGUUCCuGUaGGGAGC--CGUGa -5'
6403 5' -53.5 NC_001847.1 + 122566 0.66 0.962461
Target:  5'- cGAgUGCGAGGGCG-CCgCguacgCGGCGCc -3'
miRNA:   3'- cCUgAUGUUCCUGUaGG-Ga----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 76409 0.7 0.835712
Target:  5'- gGGGCcgcgGCGGGGGCAcCCCgCGGCGg- -3'
miRNA:   3'- -CCUGa---UGUUCCUGUaGGGaGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 133790 0.69 0.844055
Target:  5'- cGGGC-GCAAGGACAUggCCgCgcagggcgCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUCCUGUA--GG-Ga-------GCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 77538 0.69 0.875343
Target:  5'- cGAgcGCGAGGGCGUggcgcaCCCUCGuGCGCUu -3'
miRNA:   3'- cCUgaUGUUCCUGUA------GGGAGC-CGUGA- -5'
6403 5' -53.5 NC_001847.1 + 32529 0.68 0.896449
Target:  5'- cGGCUGucgGAGGcgaugcgcgcGCAgCCCUCGGCGCUg -3'
miRNA:   3'- cCUGAUg--UUCC----------UGUaGGGAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 86561 0.68 0.909323
Target:  5'- gGGACgcCGAGGACggCgCCgaagacggCGGCGCUu -3'
miRNA:   3'- -CCUGauGUUCCUGuaG-GGa-------GCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 30344 0.66 0.945222
Target:  5'- uGGACgACGAGcaccgcgcguugcuGGCGggCCaCUCGGCGCUg -3'
miRNA:   3'- -CCUGaUGUUC--------------CUGUa-GG-GAGCCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 18080 0.67 0.937172
Target:  5'- aGGGCggagGCGAGGGCGaggcuuccgccUCCUCGGCGa- -3'
miRNA:   3'- -CCUGa---UGUUCCUGUa----------GGGAGCCGUga -5'
6403 5' -53.5 NC_001847.1 + 114809 0.68 0.903008
Target:  5'- gGGGgUGCccuggcGGuACAuggUCCCUCGGCGCg -3'
miRNA:   3'- -CCUgAUGuu----CC-UGU---AGGGAGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 54028 0.71 0.781885
Target:  5'- -aGCUGCAGuucuGGAUGUCCUcgUCGGCGCg -3'
miRNA:   3'- ccUGAUGUU----CCUGUAGGG--AGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 14078 0.67 0.941994
Target:  5'- uGGGCcGCucguGGACAUCgCggaGGCGCUg -3'
miRNA:   3'- -CCUGaUGuu--CCUGUAGgGag-CCGUGA- -5'
6403 5' -53.5 NC_001847.1 + 130896 0.7 0.800488
Target:  5'- gGGACUGaggcgGGGGGCGgcggugCCCUCGGgGCc -3'
miRNA:   3'- -CCUGAUg----UUCCUGUa-----GGGAGCCgUGa -5'
6403 5' -53.5 NC_001847.1 + 80835 0.68 0.903008
Target:  5'- cGACUGgGGGGGCAgaUCCgggcggCGGCGCg -3'
miRNA:   3'- cCUGAUgUUCCUGU--AGGga----GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 70083 0.67 0.941994
Target:  5'- gGGACUGCucgcgGAGGagGCGUCCgaCGGgACg -3'
miRNA:   3'- -CCUGAUG-----UUCC--UGUAGGgaGCCgUGa -5'
6403 5' -53.5 NC_001847.1 + 51750 0.66 0.946569
Target:  5'- cGGCUGCucuccaagGAGGACAUCgagacgaUCGGCGCc -3'
miRNA:   3'- cCUGAUG--------UUCCUGUAGgg-----AGCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 27526 0.7 0.818454
Target:  5'- cGGCgGCGGGGACG-CCCgagaacggCGGCGCg -3'
miRNA:   3'- cCUGaUGUUCCUGUaGGGa-------GCCGUGa -5'
6403 5' -53.5 NC_001847.1 + 35967 0.69 0.852196
Target:  5'- aGGACcACGAGGGCG-CCaa-GGCGCg -3'
miRNA:   3'- -CCUGaUGUUCCUGUaGGgagCCGUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.