miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6414 5' -63.1 NC_001847.1 + 80876 1.07 0.000895
Target:  5'- uGAGCGCCUCGAGCCGCUCGUCGGGCGc -3'
miRNA:   3'- -CUCGCGGAGCUCGGCGAGCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 21367 0.78 0.111396
Target:  5'- cGGCGgCUCGGGCCGC-C-UCGGGCGg -3'
miRNA:   3'- cUCGCgGAGCUCGGCGaGcAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 125631 0.77 0.120099
Target:  5'- -cGCGCCgcccgcucggcUCGGGuCCGCUCGUCGcGGCGc -3'
miRNA:   3'- cuCGCGG-----------AGCUC-GGCGAGCAGC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 68932 0.77 0.126248
Target:  5'- -cGCGCC-CGAGCCGC-CGcUGGGCGg -3'
miRNA:   3'- cuCGCGGaGCUCGGCGaGCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 80497 0.76 0.13602
Target:  5'- cGAGCGCUUCGAgaGCCGCUCGgcauagcgcugUCGGcGCa -3'
miRNA:   3'- -CUCGCGGAGCU--CGGCGAGC-----------AGCC-CGc -5'
6414 5' -63.1 NC_001847.1 + 49911 0.76 0.13602
Target:  5'- uGGCGCCgCcGGCCGCcuUCGUCGGGCu -3'
miRNA:   3'- cUCGCGGaGcUCGGCG--AGCAGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 102094 0.76 0.141861
Target:  5'- cAGCGCCUCG-GCCGCgagcgCGUCcagcucggcggagaGGGCGg -3'
miRNA:   3'- cUCGCGGAGCuCGGCGa----GCAG--------------CCCGC- -5'
6414 5' -63.1 NC_001847.1 + 54368 0.76 0.15386
Target:  5'- -cGCGCUgcgCGAGCUGCUgCGgCGGGCGg -3'
miRNA:   3'- cuCGCGGa--GCUCGGCGA-GCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 15020 0.76 0.15386
Target:  5'- uGGgGCCgcgCGAGCCGCggcCGcCGGGCGa -3'
miRNA:   3'- cUCgCGGa--GCUCGGCGa--GCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 81644 0.75 0.163157
Target:  5'- cGAGUGCCgccgacuucgagcaCGAGCUGCUCGUgacgcugcucgCGGGCGa -3'
miRNA:   3'- -CUCGCGGa-------------GCUCGGCGAGCA-----------GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 80460 0.75 0.173796
Target:  5'- cGGGCGCCgcc-GCCGC-CGUCGGGCc -3'
miRNA:   3'- -CUCGCGGagcuCGGCGaGCAGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 72745 0.74 0.186388
Target:  5'- cAGCGCCggCGGGUgCGCUaaagacgCGUCGGGCGg -3'
miRNA:   3'- cUCGCGGa-GCUCG-GCGA-------GCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 125205 0.74 0.191371
Target:  5'- aGGCGCC-CGGGCCGCggcgagcgugcUCGUCcgcggGGGCGg -3'
miRNA:   3'- cUCGCGGaGCUCGGCG-----------AGCAG-----CCCGC- -5'
6414 5' -63.1 NC_001847.1 + 22392 0.74 0.191371
Target:  5'- aGGCGCC-CGGGCCGCggcgagcgugcUCGUCcgcggGGGCGg -3'
miRNA:   3'- cUCGCGGaGCUCGGCG-----------AGCAG-----CCCGC- -5'
6414 5' -63.1 NC_001847.1 + 109968 0.74 0.196002
Target:  5'- cGGGCGUgUCGcGCuCGCUCGccCGGGCGg -3'
miRNA:   3'- -CUCGCGgAGCuCG-GCGAGCa-GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 7155 0.74 0.196002
Target:  5'- cGGGCGUgUCGcGCuCGCUCGccCGGGCGg -3'
miRNA:   3'- -CUCGCGgAGCuCG-GCGAGCa-GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 79239 0.74 0.200731
Target:  5'- cGGGCGCgCUCcccGAGCUGCUagccggCGUCGGGCc -3'
miRNA:   3'- -CUCGCG-GAG---CUCGGCGA------GCAGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 126951 0.74 0.200731
Target:  5'- cGGCGCCUCGAGUgGCUucCGUCcGGCc -3'
miRNA:   3'- cUCGCGGAGCUCGgCGA--GCAGcCCGc -5'
6414 5' -63.1 NC_001847.1 + 105613 0.74 0.210487
Target:  5'- cGAGCGCC-CGcGCCGCg---CGGGCGa -3'
miRNA:   3'- -CUCGCGGaGCuCGGCGagcaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 48845 0.73 0.215516
Target:  5'- gGGGCGCCUCG-GCCGCg---CGGcGCGa -3'
miRNA:   3'- -CUCGCGGAGCuCGGCGagcaGCC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.