Results 1 - 20 of 280 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6414 | 5' | -63.1 | NC_001847.1 | + | 21367 | 0.78 | 0.111396 |
Target: 5'- cGGCGgCUCGGGCCGC-C-UCGGGCGg -3' miRNA: 3'- cUCGCgGAGCUCGGCGaGcAGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 56773 | 0.72 | 0.271635 |
Target: 5'- uGGCGCgCUCGAacgGCaCGCUCGagGGGCu -3' miRNA: 3'- cUCGCG-GAGCU---CG-GCGAGCagCCCGc -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 57693 | 0.72 | 0.277851 |
Target: 5'- uGGGCGCCgCGGguGCCGCgcucucgaccgUGUCGGGCa -3' miRNA: 3'- -CUCGCGGaGCU--CGGCGa----------GCAGCCCGc -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 107418 | 0.66 | 0.592299 |
Target: 5'- --cCGCCacagcUCG-GCCaGCUCGgcgCGGGCGg -3' miRNA: 3'- cucGCGG-----AGCuCGG-CGAGCa--GCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 81644 | 0.75 | 0.163157 |
Target: 5'- cGAGUGCCgccgacuucgagcaCGAGCUGCUCGUgacgcugcucgCGGGCGa -3' miRNA: 3'- -CUCGCGGa-------------GCUCGGCGAGCA-----------GCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 80460 | 0.75 | 0.173796 |
Target: 5'- cGGGCGCCgcc-GCCGC-CGUCGGGCc -3' miRNA: 3'- -CUCGCGGagcuCGGCGaGCAGCCCGc -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 109968 | 0.74 | 0.196002 |
Target: 5'- cGGGCGUgUCGcGCuCGCUCGccCGGGCGg -3' miRNA: 3'- -CUCGCGgAGCuCG-GCGAGCa-GCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 79239 | 0.74 | 0.200731 |
Target: 5'- cGGGCGCgCUCcccGAGCUGCUagccggCGUCGGGCc -3' miRNA: 3'- -CUCGCG-GAG---CUCGGCGA------GCAGCCCGc -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 17865 | 0.73 | 0.220648 |
Target: 5'- cAGCGCCgcCGGGUCGCcCGuccUCGGGCGg -3' miRNA: 3'- cUCGCGGa-GCUCGGCGaGC---AGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 37207 | 0.72 | 0.25954 |
Target: 5'- aGGCGCC-CGGuGCCGCUUGgcggCGGcGCGg -3' miRNA: 3'- cUCGCGGaGCU-CGGCGAGCa---GCC-CGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 104743 | 0.73 | 0.236671 |
Target: 5'- cGGCGCggcggccaCUCGGGCCGCcggcgcucguccUCGcCGGGCGg -3' miRNA: 3'- cUCGCG--------GAGCUCGGCG------------AGCaGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 60446 | 0.73 | 0.220648 |
Target: 5'- -cGCGCgUCGGcGCUGCcccCGUCGGGCGc -3' miRNA: 3'- cuCGCGgAGCU-CGGCGa--GCAGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 68932 | 0.77 | 0.126248 |
Target: 5'- -cGCGCC-CGAGCCGC-CGcUGGGCGg -3' miRNA: 3'- cuCGCGGaGCUCGGCGaGCaGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 4532 | 0.72 | 0.25954 |
Target: 5'- -cGUGCCUCGcggcGGCCGCcCG-CGGGUGg -3' miRNA: 3'- cuCGCGGAGC----UCGGCGaGCaGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 15020 | 0.76 | 0.15386 |
Target: 5'- uGGgGCCgcgCGAGCCGCggcCGcCGGGCGa -3' miRNA: 3'- cUCgCGGa--GCUCGGCGa--GCaGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 48845 | 0.73 | 0.215516 |
Target: 5'- gGGGCGCCUCG-GCCGCg---CGGcGCGa -3' miRNA: 3'- -CUCGCGGAGCuCGGCGagcaGCC-CGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 19630 | 0.72 | 0.25954 |
Target: 5'- gGGGCGCCggCGucggcgcgcGGCCGCUUG-CGGGCc -3' miRNA: 3'- -CUCGCGGa-GC---------UCGGCGAGCaGCCCGc -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 76400 | 0.72 | 0.271635 |
Target: 5'- gGGGCGCCggGGGCCGCggCGg-GGGCa -3' miRNA: 3'- -CUCGCGGagCUCGGCGa-GCagCCCGc -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 54368 | 0.76 | 0.15386 |
Target: 5'- -cGCGCUgcgCGAGCUGCUgCGgCGGGCGg -3' miRNA: 3'- cuCGCGGa--GCUCGGCGA-GCaGCCCGC- -5' |
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6414 | 5' | -63.1 | NC_001847.1 | + | 125205 | 0.74 | 0.191371 |
Target: 5'- aGGCGCC-CGGGCCGCggcgagcgugcUCGUCcgcggGGGCGg -3' miRNA: 3'- cUCGCGGaGCUCGGCG-----------AGCAG-----CCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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