miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6414 5' -63.1 NC_001847.1 + 1190 0.7 0.346273
Target:  5'- --cCGCCgCG-GCCggcaGCUCGUCGGGCGc -3'
miRNA:   3'- cucGCGGaGCuCGG----CGAGCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 1497 0.71 0.290621
Target:  5'- cGGCGCCUCgggguaGAGCCGCgCGUa-GGCGg -3'
miRNA:   3'- cUCGCGGAG------CUCGGCGaGCAgcCCGC- -5'
6414 5' -63.1 NC_001847.1 + 1585 0.68 0.425954
Target:  5'- -cGCGCCagCGcGCCGCUCGggccagcgCGcGGCGc -3'
miRNA:   3'- cuCGCGGa-GCuCGGCGAGCa-------GC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 1930 0.73 0.236671
Target:  5'- cGGCGCggcggccaCUCGGGCCGCcggcgcucguccUCGcCGGGCGg -3'
miRNA:   3'- cUCGCG--------GAGCUCGGCG------------AGCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 2084 0.68 0.434505
Target:  5'- cGAGCGCCccgCGGGgcCCGCgcggCGgCGGGCc -3'
miRNA:   3'- -CUCGCGGa--GCUC--GGCGa---GCaGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 2129 0.69 0.38475
Target:  5'- cAGCGCCUCgGGGUCGaaggcgagCGcCGGGCGc -3'
miRNA:   3'- cUCGCGGAG-CUCGGCga------GCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 2175 0.69 0.38475
Target:  5'- cAGCGCC-CGcGCCGCcugggcggCGUgCGGGCGc -3'
miRNA:   3'- cUCGCGGaGCuCGGCGa-------GCA-GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 2176 0.66 0.582554
Target:  5'- aGAGCGggugguCCgCGAGCCGCgccgCGaccUCGgGGCGg -3'
miRNA:   3'- -CUCGC------GGaGCUCGGCGa---GC---AGC-CCGC- -5'
6414 5' -63.1 NC_001847.1 + 2228 0.66 0.563168
Target:  5'- cAGCGCCgCGGcGCUGggCG-CGGGCGu -3'
miRNA:   3'- cUCGCGGaGCU-CGGCgaGCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 2993 0.66 0.586449
Target:  5'- cGGCGCUg-GAGCCGCgcgcgcuccaccgcgUCG-CGGGCc -3'
miRNA:   3'- cUCGCGGagCUCGGCG---------------AGCaGCCCGc -5'
6414 5' -63.1 NC_001847.1 + 3757 0.66 0.543958
Target:  5'- cAGCGCUUCGucGCCG-UCGagcagccCGGGCGg -3'
miRNA:   3'- cUCGCGGAGCu-CGGCgAGCa------GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 3978 0.66 0.582554
Target:  5'- aGGGCGCCggGGGCCGggCG-CGcGGCc -3'
miRNA:   3'- -CUCGCGGagCUCGGCgaGCaGC-CCGc -5'
6414 5' -63.1 NC_001847.1 + 4392 0.66 0.553538
Target:  5'- cGGCGCCaCGGucGCCGC-CGUCGacgccgacGGCGg -3'
miRNA:   3'- cUCGCGGaGCU--CGGCGaGCAGC--------CCGC- -5'
6414 5' -63.1 NC_001847.1 + 4532 0.72 0.25954
Target:  5'- -cGUGCCUCGcggcGGCCGCcCG-CGGGUGg -3'
miRNA:   3'- cuCGCGGAGC----UCGGCGaGCaGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 4605 0.66 0.592299
Target:  5'- --cCGCCacagcUCG-GCCaGCUCGgcgCGGGCGg -3'
miRNA:   3'- cucGCGG-----AGCuCGG-CGAGCa--GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 5032 0.68 0.451901
Target:  5'- aGGGCGCuCUCGuacucgucccAGcCCGCgucgCgGUCGGGCGc -3'
miRNA:   3'- -CUCGCG-GAGC----------UC-GGCGa---G-CAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 6127 0.71 0.297177
Target:  5'- cGAGCGCCUC--GCCGCcaUCGggGGGCu -3'
miRNA:   3'- -CUCGCGGAGcuCGGCG--AGCagCCCGc -5'
6414 5' -63.1 NC_001847.1 + 7155 0.74 0.196002
Target:  5'- cGGGCGUgUCGcGCuCGCUCGccCGGGCGg -3'
miRNA:   3'- -CUCGCGgAGCuCG-GCGAGCa-GCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 7230 0.69 0.400914
Target:  5'- uGGCGCUgc-AGCgGCUgGUCGGGUGg -3'
miRNA:   3'- cUCGCGGagcUCGgCGAgCAGCCCGC- -5'
6414 5' -63.1 NC_001847.1 + 7712 0.67 0.486876
Target:  5'- -cGCGCCUUGGGCauucaggCGCagGgcgCGGGCGc -3'
miRNA:   3'- cuCGCGGAGCUCG-------GCGagCa--GCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.