Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6419 | 5' | -55.2 | NC_001847.1 | + | 78407 | 1.12 | 0.001536 |
Target: 5'- uACAGCUUGGCCAGCUCGUUGCUGAGCa -3' miRNA: 3'- -UGUCGAACCGGUCGAGCAACGACUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 107422 | 0.85 | 0.104033 |
Target: 5'- cACAGCUcGGCCAGCUCGgcGC-GGGCg -3' miRNA: 3'- -UGUCGAaCCGGUCGAGCaaCGaCUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 4609 | 0.85 | 0.104033 |
Target: 5'- cACAGCUcGGCCAGCUCGgcGC-GGGCg -3' miRNA: 3'- -UGUCGAaCCGGUCGAGCaaCGaCUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 32960 | 0.77 | 0.299269 |
Target: 5'- gACAGCgcggUGGCCGaCUUGgcgGCUGAGCu -3' miRNA: 3'- -UGUCGa---ACCGGUcGAGCaa-CGACUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 107562 | 0.77 | 0.328888 |
Target: 5'- -gAGCgUGGCCAGCUCGagccUGCcGGGCg -3' miRNA: 3'- ugUCGaACCGGUCGAGCa---ACGaCUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 4749 | 0.77 | 0.328888 |
Target: 5'- -gAGCgUGGCCAGCUCGagccUGCcGGGCg -3' miRNA: 3'- ugUCGaACCGGUCGAGCa---ACGaCUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 78974 | 0.76 | 0.336623 |
Target: 5'- cGCAGCcucgggGGCguGCUCGggcggcUGCUGAGCc -3' miRNA: 3'- -UGUCGaa----CCGguCGAGCa-----ACGACUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 115900 | 0.76 | 0.344489 |
Target: 5'- cGCcGCUUGGCCGGCUCGcgcaggcGCUG-GCu -3' miRNA: 3'- -UGuCGAACCGGUCGAGCaa-----CGACuCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 74602 | 0.75 | 0.394417 |
Target: 5'- gACGGCgUGGCCAacGCcaUCGUgcaGCUGGGCa -3' miRNA: 3'- -UGUCGaACCGGU--CG--AGCAa--CGACUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 89857 | 0.74 | 0.477491 |
Target: 5'- cCGGCUgcaaGGCCGGCUCGccGCggcGGGCu -3' miRNA: 3'- uGUCGAa---CCGGUCGAGCaaCGa--CUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 32676 | 0.73 | 0.497117 |
Target: 5'- gGCGGCgcgGGCCcGCUCGa-GCUGuGCg -3' miRNA: 3'- -UGUCGaa-CCGGuCGAGCaaCGACuCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 79384 | 0.73 | 0.507065 |
Target: 5'- gGCAGCgcgcGGCUcGC-CGUgggGCUGAGCg -3' miRNA: 3'- -UGUCGaa--CCGGuCGaGCAa--CGACUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 14675 | 0.73 | 0.537391 |
Target: 5'- gACGGCgcGGCCGGCggCGcgGCgaugGAGCa -3' miRNA: 3'- -UGUCGaaCCGGUCGa-GCaaCGa---CUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 60481 | 0.72 | 0.589186 |
Target: 5'- cGCGGCUcGGCCGGCUCcagGCgcAGCa -3' miRNA: 3'- -UGUCGAaCCGGUCGAGcaaCGacUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 95812 | 0.72 | 0.589186 |
Target: 5'- uGguGCUUGGacCCGGCUCGgcgGCagGGGCa -3' miRNA: 3'- -UguCGAACC--GGUCGAGCaa-CGa-CUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 48170 | 0.71 | 0.599673 |
Target: 5'- cCGGCccGGCCGGCggCGUccUGCUGuGCc -3' miRNA: 3'- uGUCGaaCCGGUCGa-GCA--ACGACuCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 124982 | 0.71 | 0.610186 |
Target: 5'- cGCAGCgggccGGCCuGCUCGggcgagaGCUGcAGCa -3' miRNA: 3'- -UGUCGaa---CCGGuCGAGCaa-----CGAC-UCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 22169 | 0.71 | 0.610186 |
Target: 5'- cGCAGCgggccGGCCuGCUCGggcgagaGCUGcAGCa -3' miRNA: 3'- -UGUCGaa---CCGGuCGAGCaa-----CGAC-UCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 66241 | 0.71 | 0.620715 |
Target: 5'- uCAGCgcGGCgGcGCUCGgcaUGCUGGGCc -3' miRNA: 3'- uGUCGaaCCGgU-CGAGCa--ACGACUCG- -5' |
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6419 | 5' | -55.2 | NC_001847.1 | + | 2215 | 0.71 | 0.631254 |
Target: 5'- gGCAGUagGccGCCAGCgccgCGgcGCUGGGCg -3' miRNA: 3'- -UGUCGaaC--CGGUCGa---GCaaCGACUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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