miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 5' -55.2 NC_001847.1 + 1931 0.67 0.846473
Target:  5'- -aGGCUUaGCCGGCgcgCGgcGCaGAGCu -3'
miRNA:   3'- ugUCGAAcCGGUCGa--GCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 2215 0.71 0.631254
Target:  5'- gGCAGUagGccGCCAGCgccgCGgcGCUGGGCg -3'
miRNA:   3'- -UGUCGaaC--CGGUCGa---GCaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 3299 0.69 0.764943
Target:  5'- cGCAGCUcGGCgAGCgCGgcGC-GGGCg -3'
miRNA:   3'- -UGUCGAaCCGgUCGaGCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 4609 0.85 0.104033
Target:  5'- cACAGCUcGGCCAGCUCGgcGC-GGGCg -3'
miRNA:   3'- -UGUCGAaCCGGUCGAGCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 4749 0.77 0.328888
Target:  5'- -gAGCgUGGCCAGCUCGagccUGCcGGGCg -3'
miRNA:   3'- ugUCGaACCGGUCGAGCa---ACGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 5326 0.66 0.877719
Target:  5'- gGCAGaa-GGCCGGCcggUCGgaGCUG-GCu -3'
miRNA:   3'- -UGUCgaaCCGGUCG---AGCaaCGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 10451 0.68 0.793591
Target:  5'- cCGGCUccccUGGCCg---CGUUGCUGgAGCg -3'
miRNA:   3'- uGUCGA----ACCGGucgaGCAACGAC-UCG- -5'
6419 5' -55.2 NC_001847.1 + 12326 0.69 0.714829
Target:  5'- -gGGCgcgcccGCCGGCUCGcUGgUGAGCg -3'
miRNA:   3'- ugUCGaac---CGGUCGAGCaACgACUCG- -5'
6419 5' -55.2 NC_001847.1 + 14291 0.66 0.870241
Target:  5'- cGCGGCgaaauggcgUGGCCGGCcgccucUCGggGCcucaucGAGCg -3'
miRNA:   3'- -UGUCGa--------ACCGGUCG------AGCaaCGa-----CUCG- -5'
6419 5' -55.2 NC_001847.1 + 14675 0.73 0.537391
Target:  5'- gACGGCgcGGCCGGCggCGcgGCgaugGAGCa -3'
miRNA:   3'- -UGUCGaaCCGGUCGa-GCaaCGa---CUCG- -5'
6419 5' -55.2 NC_001847.1 + 15076 0.67 0.854612
Target:  5'- cGCGGCUcGGCaggAGC-CGggGCUagGAGCa -3'
miRNA:   3'- -UGUCGAaCCGg--UCGaGCaaCGA--CUCG- -5'
6419 5' -55.2 NC_001847.1 + 15094 0.71 0.652326
Target:  5'- gGCAGCggGGCCGcGCUCa-UGCUGAcgGCc -3'
miRNA:   3'- -UGUCGaaCCGGU-CGAGcaACGACU--CG- -5'
6419 5' -55.2 NC_001847.1 + 15367 0.67 0.829584
Target:  5'- -aGGCUcGGCCAGCcuUCGggGCggucGGCg -3'
miRNA:   3'- ugUCGAaCCGGUCG--AGCaaCGac--UCG- -5'
6419 5' -55.2 NC_001847.1 + 15424 0.67 0.862537
Target:  5'- cGCGGCacGGCgAGCUgGUUuaaGCUG-GCg -3'
miRNA:   3'- -UGUCGaaCCGgUCGAgCAA---CGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 16594 0.67 0.854612
Target:  5'- gGCGGCgugggGuGCCGGCgaucaGacGCUGAGCa -3'
miRNA:   3'- -UGUCGaa---C-CGGUCGag---CaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 18508 0.67 0.846473
Target:  5'- cGCGGCUgccgaGGCCAGCgc--UGC-GGGCg -3'
miRNA:   3'- -UGUCGAa----CCGGUCGagcaACGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 21622 0.68 0.784183
Target:  5'- gGCGgcGCUUGGCCGGCgCGggccGCgcccGGGCg -3'
miRNA:   3'- -UGU--CGAACCGGUCGaGCaa--CGa---CUCG- -5'
6419 5' -55.2 NC_001847.1 + 22106 0.66 0.870999
Target:  5'- uGCGGCUgcuGCCGGCgucccagacgcgcggCGgcgUGCUGgAGCg -3'
miRNA:   3'- -UGUCGAac-CGGUCGa--------------GCa--ACGAC-UCG- -5'
6419 5' -55.2 NC_001847.1 + 22169 0.71 0.610186
Target:  5'- cGCAGCgggccGGCCuGCUCGggcgagaGCUGcAGCa -3'
miRNA:   3'- -UGUCGaa---CCGGuCGAGCaa-----CGAC-UCG- -5'
6419 5' -55.2 NC_001847.1 + 22919 0.67 0.846473
Target:  5'- -gGGCUggGGUgGGCUgGgcuggGCUGGGCu -3'
miRNA:   3'- ugUCGAa-CCGgUCGAgCaa---CGACUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.