miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6419 5' -55.2 NC_001847.1 + 107422 0.85 0.104033
Target:  5'- cACAGCUcGGCCAGCUCGgcGC-GGGCg -3'
miRNA:   3'- -UGUCGAaCCGGUCGAGCaaCGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 101652 0.69 0.714829
Target:  5'- aAUGGC--GGUCAGgUCGgaggUGCUGAGCc -3'
miRNA:   3'- -UGUCGaaCCGGUCgAGCa---ACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 133260 0.69 0.745202
Target:  5'- cGCGGCgcugGGCaacCGGCU-GcUGCUGAGCg -3'
miRNA:   3'- -UGUCGaa--CCG---GUCGAgCaACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 116613 0.66 0.901378
Target:  5'- uACGGCcUGGCCGGCacccuggagacgaacUCGccagagcUGCUGGcGCg -3'
miRNA:   3'- -UGUCGaACCGGUCG---------------AGCa------ACGACU-CG- -5'
6419 5' -55.2 NC_001847.1 + 74602 0.75 0.394417
Target:  5'- gACGGCgUGGCCAacGCcaUCGUgcaGCUGGGCa -3'
miRNA:   3'- -UGUCGaACCGGU--CG--AGCAa--CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 32676 0.73 0.497117
Target:  5'- gGCGGCgcgGGCCcGCUCGa-GCUGuGCg -3'
miRNA:   3'- -UGUCGaa-CCGGuCGAGCaaCGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 14675 0.73 0.537391
Target:  5'- gACGGCgcGGCCGGCggCGcgGCgaugGAGCa -3'
miRNA:   3'- -UGUCGaaCCGGUCGa-GCaaCGa---CUCG- -5'
6419 5' -55.2 NC_001847.1 + 48170 0.71 0.599673
Target:  5'- cCGGCccGGCCGGCggCGUccUGCUGuGCc -3'
miRNA:   3'- uGUCGaaCCGGUCGa-GCA--ACGACuCG- -5'
6419 5' -55.2 NC_001847.1 + 105028 0.71 0.631254
Target:  5'- gGCAGUagGccGCCAGCgccgCGgcGCUGGGCg -3'
miRNA:   3'- -UGUCGaaC--CGGUCGa---GCaaCGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 35413 0.69 0.714829
Target:  5'- cCGGCUcGGCCuacgaGGCgcaGaUGCUGAGCa -3'
miRNA:   3'- uGUCGAaCCGG-----UCGag-CaACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 65115 0.71 0.652326
Target:  5'- cGCGGCUcGGCUggcgguggGGCUCGgcuucCUGAGCg -3'
miRNA:   3'- -UGUCGAaCCGG--------UCGAGCaac--GACUCG- -5'
6419 5' -55.2 NC_001847.1 + 66241 0.71 0.620715
Target:  5'- uCAGCgcGGCgGcGCUCGgcaUGCUGGGCc -3'
miRNA:   3'- uGUCGaaCCGgU-CGAGCa--ACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 32960 0.77 0.299269
Target:  5'- gACAGCgcggUGGCCGaCUUGgcgGCUGAGCu -3'
miRNA:   3'- -UGUCGa---ACCGGUcGAGCaa-CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 33994 0.7 0.683781
Target:  5'- -gGGCUgGGcCCAGCcuucgCGgcggUGCUGGGCa -3'
miRNA:   3'- ugUCGAaCC-GGUCGa----GCa---ACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 107562 0.77 0.328888
Target:  5'- -gAGCgUGGCCAGCUCGagccUGCcGGGCg -3'
miRNA:   3'- ugUCGaACCGGUCGAGCa---ACGaCUCG- -5'
6419 5' -55.2 NC_001847.1 + 124982 0.71 0.610186
Target:  5'- cGCAGCgggccGGCCuGCUCGggcgagaGCUGcAGCa -3'
miRNA:   3'- -UGUCGaa---CCGGuCGAGCaa-----CGAC-UCG- -5'
6419 5' -55.2 NC_001847.1 + 26811 0.7 0.704541
Target:  5'- gACGGCcgugacgcUGGCCAGCUUGUcuUGCgugguccacgaGAGCa -3'
miRNA:   3'- -UGUCGa-------ACCGGUCGAGCA--ACGa----------CUCG- -5'
6419 5' -55.2 NC_001847.1 + 125732 0.69 0.725041
Target:  5'- -gGGCUggggugGGCUGGCUgGgcuggGCUGGGCu -3'
miRNA:   3'- ugUCGAa-----CCGGUCGAgCaa---CGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 78974 0.76 0.336623
Target:  5'- cGCAGCcucgggGGCguGCUCGggcggcUGCUGAGCc -3'
miRNA:   3'- -UGUCGaa----CCGguCGAGCa-----ACGACUCG- -5'
6419 5' -55.2 NC_001847.1 + 79384 0.73 0.507065
Target:  5'- gGCAGCgcgcGGCUcGC-CGUgggGCUGAGCg -3'
miRNA:   3'- -UGUCGaa--CCGGuCGaGCAa--CGACUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.