miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 3' -54.9 NC_001847.1 + 77052 1.14 0.001543
Target:  5'- gCCAUCGGAAGCUGCUGGUACUCCGGCg -3'
miRNA:   3'- -GGUAGCCUUCGACGACCAUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 57767 0.79 0.307504
Target:  5'- gCCA-CGG-GGCUGCUGGUGCUcgCCGGg -3'
miRNA:   3'- -GGUaGCCuUCGACGACCAUGA--GGCCg -5'
6423 3' -54.9 NC_001847.1 + 44648 0.79 0.313982
Target:  5'- gCAUCGGAGGCUGCUGccccgccugcaccGUGa-CCGGCg -3'
miRNA:   3'- gGUAGCCUUCGACGAC-------------CAUgaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 51541 0.77 0.393676
Target:  5'- -uGUCGGAGGCUGCgcgcgcgcGcGUGCUCgGGCu -3'
miRNA:   3'- ggUAGCCUUCGACGa-------C-CAUGAGgCCG- -5'
6423 3' -54.9 NC_001847.1 + 20785 0.76 0.409192
Target:  5'- gCGagGGggGCUGCagcaucgcggcgGGUGCUUCGGCg -3'
miRNA:   3'- gGUagCCuuCGACGa-----------CCAUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 85377 0.75 0.464483
Target:  5'- aCGUCGGGcauguacAGCUGCacggGGUACagCGGCa -3'
miRNA:   3'- gGUAGCCU-------UCGACGa---CCAUGagGCCG- -5'
6423 3' -54.9 NC_001847.1 + 69334 0.74 0.523424
Target:  5'- gCC-UCGGgcGCUGCUGGcgGCgcuggugCUGGCg -3'
miRNA:   3'- -GGuAGCCuuCGACGACCa-UGa------GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 36287 0.73 0.573767
Target:  5'- cCCuucCGGGAuCUGCUGGUGCUgCGGa -3'
miRNA:   3'- -GGua-GCCUUcGACGACCAUGAgGCCg -5'
6423 3' -54.9 NC_001847.1 + 13627 0.73 0.582964
Target:  5'- gCUcgCGGGacacacgcagcgaAGCUcgcGCUGGUuCUCCGGCg -3'
miRNA:   3'- -GGuaGCCU-------------UCGA---CGACCAuGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 107784 0.73 0.583987
Target:  5'- cCCGg-GGggGCaGCUGGgGCUgCGGCg -3'
miRNA:   3'- -GGUagCCuuCGaCGACCaUGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 101380 0.73 0.594243
Target:  5'- gCCG-CGGggGCUGCccgcGGcGCcgCCGGCa -3'
miRNA:   3'- -GGUaGCCuuCGACGa---CCaUGa-GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 5217 0.73 0.614832
Target:  5'- gCCGcgaCGGAAGCUGCgcaugGCUCCGuGCa -3'
miRNA:   3'- -GGUa--GCCUUCGACGacca-UGAGGC-CG- -5'
6423 3' -54.9 NC_001847.1 + 94316 0.71 0.676655
Target:  5'- gUCAUCGacGAggccgGGCUGCUGGg---CCGGCa -3'
miRNA:   3'- -GGUAGC--CU-----UCGACGACCaugaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 72495 0.71 0.694011
Target:  5'- aCCAgCGGAAcgacgaaacGCUGCUGGacggggccuucuucUAC-CCGGCg -3'
miRNA:   3'- -GGUaGCCUU---------CGACGACC--------------AUGaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 117521 0.71 0.717242
Target:  5'- aCCAagaCGGGGaCUGCaUGGUGcCUCUGGCa -3'
miRNA:   3'- -GGUa--GCCUUcGACG-ACCAU-GAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 44226 0.71 0.727226
Target:  5'- gCCGUCGcccGGCUGCUGcuaGCggCCGGCa -3'
miRNA:   3'- -GGUAGCcu-UCGACGACca-UGa-GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 11172 0.7 0.737127
Target:  5'- gCGUCGGGAGCUggggcugccGCUGGUccgcGCggggCUGGUc -3'
miRNA:   3'- gGUAGCCUUCGA---------CGACCA----UGa---GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 116944 0.7 0.746936
Target:  5'- cCCGUacc--GCUGCcuggcGGUGCUCCGGCu -3'
miRNA:   3'- -GGUAgccuuCGACGa----CCAUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 117035 0.7 0.746936
Target:  5'- aCCGcCGcGGAGCUGCUGGagcaccccguCUUCGGUg -3'
miRNA:   3'- -GGUaGC-CUUCGACGACCau--------GAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 62891 0.7 0.756642
Target:  5'- uUCGUCGGGugcAGCgggugGCgcgGGUGCUCgGGg -3'
miRNA:   3'- -GGUAGCCU---UCGa----CGa--CCAUGAGgCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.