miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 3' -54.9 NC_001847.1 + 1135 0.66 0.916023
Target:  5'- aCCAgCGGcGGCgccucgGCgcgcgGCUCCGGCa -3'
miRNA:   3'- -GGUaGCCuUCGa-----CGacca-UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 1374 0.67 0.901959
Target:  5'- cCCGUC-GAGcgccggcagcacgcGCUGCcGGUACUCgcgCGGCg -3'
miRNA:   3'- -GGUAGcCUU--------------CGACGaCCAUGAG---GCCG- -5'
6423 3' -54.9 NC_001847.1 + 2538 0.68 0.869372
Target:  5'- gCCG-CGGGAccGCUGCU----CUCCGGCg -3'
miRNA:   3'- -GGUaGCCUU--CGACGAccauGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 5217 0.73 0.614832
Target:  5'- gCCGcgaCGGAAGCUGCgcaugGCUCCGuGCa -3'
miRNA:   3'- -GGUa--GCCUUCGACGacca-UGAGGC-CG- -5'
6423 3' -54.9 NC_001847.1 + 5354 0.66 0.932444
Target:  5'- -gGUCGcGcGGCgcgGCcGGgcccagGCUCCGGCg -3'
miRNA:   3'- ggUAGC-CuUCGa--CGaCCa-----UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 6140 0.67 0.874541
Target:  5'- gCCAUCgGGggGCUcgguggcggugacgGCgcgcaGGUGCUcggugaucugCCGGCg -3'
miRNA:   3'- -GGUAG-CCuuCGA--------------CGa----CCAUGA----------GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 8629 0.66 0.916023
Target:  5'- gCCGggggagCGGccGCUGC-GG-ACUCgGGCg -3'
miRNA:   3'- -GGUa-----GCCuuCGACGaCCaUGAGgCCG- -5'
6423 3' -54.9 NC_001847.1 + 10615 0.69 0.82093
Target:  5'- gCCcgCGcccuGCUggcGCUGGUcCUCCGGCu -3'
miRNA:   3'- -GGuaGCcuu-CGA---CGACCAuGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 11172 0.7 0.737127
Target:  5'- gCGUCGGGAGCUggggcugccGCUGGUccgcGCggggCUGGUc -3'
miRNA:   3'- gGUAGCCUUCGA---------CGACCA----UGa---GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 12363 0.7 0.756642
Target:  5'- cCCAcCGGAGcCUGCUGGaGCgcaCGGCc -3'
miRNA:   3'- -GGUaGCCUUcGACGACCaUGag-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 13292 0.67 0.906374
Target:  5'- aCGUCGGugAAGCacucGC-GGUcgucgaggcagacggGCUCCGGCa -3'
miRNA:   3'- gGUAGCC--UUCGa---CGaCCA---------------UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 13322 0.66 0.937432
Target:  5'- -aGUCGGccGAGCuguaccUGCUGGcGCUaCGGCa -3'
miRNA:   3'- ggUAGCC--UUCG------ACGACCaUGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 13627 0.73 0.582964
Target:  5'- gCUcgCGGGacacacgcagcgaAGCUcgcGCUGGUuCUCCGGCg -3'
miRNA:   3'- -GGuaGCCU-------------UCGA---CGACCAuGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 14120 0.67 0.876724
Target:  5'- gCGcCGGAAGCgaGCgGGcguguCUCCGGCc -3'
miRNA:   3'- gGUaGCCUUCGa-CGaCCau---GAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 14187 0.67 0.903865
Target:  5'- gCA-CGGGAGggGCUGGcgGCggggCUGGCg -3'
miRNA:   3'- gGUaGCCUUCgaCGACCa-UGa---GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 14486 0.69 0.78505
Target:  5'- gCCGUccCGGAGGC-GCUGGUucugucggACU-CGGCg -3'
miRNA:   3'- -GGUA--GCCUUCGaCGACCA--------UGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 16353 0.68 0.854023
Target:  5'- ---cUGGAGGC-GCUGGcgGCUgCCGGUg -3'
miRNA:   3'- gguaGCCUUCGaCGACCa-UGA-GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 18004 0.69 0.784122
Target:  5'- gCGUCGG-GGCUGUUGGgcguggggggcguUGCgCCGGUg -3'
miRNA:   3'- gGUAGCCuUCGACGACC-------------AUGaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 20060 0.66 0.916023
Target:  5'- aCGUuugCGGGAGCgGCgUGGcgGCUCCcgcGGCg -3'
miRNA:   3'- gGUA---GCCUUCGaCG-ACCa-UGAGG---CCG- -5'
6423 3' -54.9 NC_001847.1 + 20785 0.76 0.409192
Target:  5'- gCGagGGggGCUGCagcaucgcggcgGGUGCUUCGGCg -3'
miRNA:   3'- gGUagCCuuCGACGa-----------CCAUGAGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.