miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6423 3' -54.9 NC_001847.1 + 57767 0.79 0.307504
Target:  5'- gCCA-CGG-GGCUGCUGGUGCUcgCCGGg -3'
miRNA:   3'- -GGUaGCCuUCGACGACCAUGA--GGCCg -5'
6423 3' -54.9 NC_001847.1 + 98398 0.7 0.766236
Target:  5'- uCCGcuuUCGGAGGCagcacuUGCUcGacgcgGCUCCGGCg -3'
miRNA:   3'- -GGU---AGCCUUCG------ACGAcCa----UGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 14486 0.69 0.78505
Target:  5'- gCCGUccCGGAGGC-GCUGGUucugucggACU-CGGCg -3'
miRNA:   3'- -GGUA--GCCUUCGaCGACCA--------UGAgGCCG- -5'
6423 3' -54.9 NC_001847.1 + 70201 0.66 0.937432
Target:  5'- aCggCGGAccAGCUGCUGcgcGUGCUgCUGGa -3'
miRNA:   3'- gGuaGCCU--UCGACGAC---CAUGA-GGCCg -5'
6423 3' -54.9 NC_001847.1 + 69334 0.74 0.523424
Target:  5'- gCC-UCGGgcGCUGCUGGcgGCgcuggugCUGGCg -3'
miRNA:   3'- -GGuAGCCuuCGACGACCa-UGa------GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 36287 0.73 0.573767
Target:  5'- cCCuucCGGGAuCUGCUGGUGCUgCGGa -3'
miRNA:   3'- -GGua-GCCUUcGACGACCAUGAgGCCg -5'
6423 3' -54.9 NC_001847.1 + 101380 0.73 0.594243
Target:  5'- gCCG-CGGggGCUGCccgcGGcGCcgCCGGCa -3'
miRNA:   3'- -GGUaGCCuuCGACGa---CCaUGa-GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 5217 0.73 0.614832
Target:  5'- gCCGcgaCGGAAGCUGCgcaugGCUCCGuGCa -3'
miRNA:   3'- -GGUa--GCCUUCGACGacca-UGAGGC-CG- -5'
6423 3' -54.9 NC_001847.1 + 117521 0.71 0.717242
Target:  5'- aCCAagaCGGGGaCUGCaUGGUGcCUCUGGCa -3'
miRNA:   3'- -GGUa--GCCUUcGACG-ACCAU-GAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 12363 0.7 0.756642
Target:  5'- cCCAcCGGAGcCUGCUGGaGCgcaCGGCc -3'
miRNA:   3'- -GGUaGCCUUcGACGACCaUGag-GCCG- -5'
6423 3' -54.9 NC_001847.1 + 116944 0.7 0.746936
Target:  5'- cCCGUacc--GCUGCcuggcGGUGCUCCGGCu -3'
miRNA:   3'- -GGUAgccuuCGACGa----CCAUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 72495 0.71 0.694011
Target:  5'- aCCAgCGGAAcgacgaaacGCUGCUGGacggggccuucuucUAC-CCGGCg -3'
miRNA:   3'- -GGUaGCCUU---------CGACGACC--------------AUGaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 44648 0.79 0.313982
Target:  5'- gCAUCGGAGGCUGCUGccccgccugcaccGUGa-CCGGCg -3'
miRNA:   3'- gGUAGCCUUCGACGAC-------------CAUgaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 117035 0.7 0.746936
Target:  5'- aCCGcCGcGGAGCUGCUGGagcaccccguCUUCGGUg -3'
miRNA:   3'- -GGUaGC-CUUCGACGACCau--------GAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 51541 0.77 0.393676
Target:  5'- -uGUCGGAGGCUGCgcgcgcgcGcGUGCUCgGGCu -3'
miRNA:   3'- ggUAGCCUUCGACGa-------C-CAUGAGgCCG- -5'
6423 3' -54.9 NC_001847.1 + 94316 0.71 0.676655
Target:  5'- gUCAUCGacGAggccgGGCUGCUGGg---CCGGCa -3'
miRNA:   3'- -GGUAGC--CU-----UCGACGACCaugaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 70507 0.7 0.756642
Target:  5'- aCggCGGGcaucaagcagcGGCUGCUGGgcgGCgugCUGGCg -3'
miRNA:   3'- gGuaGCCU-----------UCGACGACCa--UGa--GGCCG- -5'
6423 3' -54.9 NC_001847.1 + 18004 0.69 0.784122
Target:  5'- gCGUCGG-GGCUGUUGGgcguggggggcguUGCgCCGGUg -3'
miRNA:   3'- gGUAGCCuUCGACGACC-------------AUGaGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 20785 0.76 0.409192
Target:  5'- gCGagGGggGCUGCagcaucgcggcgGGUGCUUCGGCg -3'
miRNA:   3'- gGUagCCuuCGACGa-----------CCAUGAGGCCG- -5'
6423 3' -54.9 NC_001847.1 + 107784 0.73 0.583987
Target:  5'- cCCGg-GGggGCaGCUGGgGCUgCGGCg -3'
miRNA:   3'- -GGUagCCuuCGaCGACCaUGAgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.