miRNA display CGI


Results 61 - 80 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 29576 0.74 0.44869
Target:  5'- gCCGGcGCCggcGCCGcCGCGCCGGGCcgGGg -3'
miRNA:   3'- -GGCCuCGG---UGGC-GCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 132058 0.74 0.44869
Target:  5'- gCCGGccGCgGCCuGCGCGCCGGACGc-- -3'
miRNA:   3'- -GGCCu-CGgUGG-CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 71387 0.74 0.44869
Target:  5'- uCCGG-GCCuggcCCGCGcCGCCAGGCGg-- -3'
miRNA:   3'- -GGCCuCGGu---GGCGC-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 14895 0.74 0.44869
Target:  5'- aCGGGGCCGuCCGCGCG-CAGGCcgAc -3'
miRNA:   3'- gGCCUCGGU-GGCGCGCgGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 132389 0.74 0.44869
Target:  5'- gCCGGcGCCggcGCCGcCGCGCCGGGCcgGGg -3'
miRNA:   3'- -GGCCuCGG---UGGC-GCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 29245 0.74 0.44869
Target:  5'- gCCGGccGCgGCCuGCGCGCCGGACGc-- -3'
miRNA:   3'- -GGCCu-CGgUGG-CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 124087 0.74 0.44869
Target:  5'- -aGGugaacuGCCGCCGCuGCgGCCAAGCAUAGu -3'
miRNA:   3'- ggCCu-----CGGUGGCG-CG-CGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 129369 0.73 0.457047
Target:  5'- cCCGGGGCUagacGCCGCGCuucgcguuggcgcGCCGGACGg-- -3'
miRNA:   3'- -GGCCUCGG----UGGCGCG-------------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 101907 0.73 0.457981
Target:  5'- gCGGAGgCGCCGCGgCGCCcGGCGc-- -3'
miRNA:   3'- gGCCUCgGUGGCGC-GCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 52298 0.73 0.457981
Target:  5'- gCCGGAcGUaCGCCGCGCGgCAAACGa-- -3'
miRNA:   3'- -GGCCU-CG-GUGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 43454 0.73 0.467373
Target:  5'- cCCGGGGCgACgGCGCggucGCCGAGCGc-- -3'
miRNA:   3'- -GGCCUCGgUGgCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34390 0.73 0.467373
Target:  5'- aCGGcGGCCGCCGcCGCGgCAGACGc-- -3'
miRNA:   3'- gGCC-UCGGUGGC-GCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 102952 0.73 0.467373
Target:  5'- gCGGuaaccuccGCCGCgCGCGCGCCAAGCu--- -3'
miRNA:   3'- gGCCu-------CGGUG-GCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 133309 0.73 0.476864
Target:  5'- gCCGGGcGCUggACgGgCGCGCCGGACGUGAg -3'
miRNA:   3'- -GGCCU-CGG--UGgC-GCGCGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 30496 0.73 0.476864
Target:  5'- gCCGGGcGCUggACgGgCGCGCCGGACGUGAg -3'
miRNA:   3'- -GGCCU-CGG--UGgC-GCGCGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 88234 0.73 0.483565
Target:  5'- gCCGGAGCCgaggccggcgcggcGCgGgGCGCCGGGCGg-- -3'
miRNA:   3'- -GGCCUCGG--------------UGgCgCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 44402 0.73 0.48645
Target:  5'- cCCGGGGCCcgGCCaCGCGCCGcgAGCGg-- -3'
miRNA:   3'- -GGCCUCGG--UGGcGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 53020 0.73 0.48645
Target:  5'- gCGGcGGCCGCUGCGCGCuCGGGCc--- -3'
miRNA:   3'- gGCC-UCGGUGGCGCGCG-GUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 78290 0.73 0.48645
Target:  5'- cCCGG-GCCGCCGgGCG-CAGACGg-- -3'
miRNA:   3'- -GGCCuCGGUGGCgCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 72225 0.73 0.48645
Target:  5'- -aGGAGCCGcCCGCGgGCCccGAGCAc-- -3'
miRNA:   3'- ggCCUCGGU-GGCGCgCGG--UUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.