miRNA display CGI


Results 1 - 20 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 58825 0.65 0.527874
Target:  5'- uGGGCCgGUGCG-AGGGUcggcacuugggccgGGCCCGCa- -3'
miRNA:   3'- -CUCGGgCGCGCgUUUCG--------------CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 16394 0.66 0.524976
Target:  5'- -cGCCCGCucgcagcagccGCGCGGGGCGaguguaucucuagucGCCCGUc- -3'
miRNA:   3'- cuCGGGCG-----------CGCGUUUCGC---------------CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 2381 0.66 0.524976
Target:  5'- -cGCCCGCgaagacggcggugacGCGCucGGCcguGGCUCGCUg -3'
miRNA:   3'- cuCGGGCG---------------CGCGuuUCG---CCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 38251 0.66 0.521121
Target:  5'- cAGuCCCGCGCgaGCAcGGCGGUCC-CUc -3'
miRNA:   3'- cUC-GGGCGCG--CGUuUCGCCGGGcGAa -5'
6425 3' -63.2 NC_001847.1 + 30911 0.66 0.521121
Target:  5'- uGGGCCCGCGCaccGCGGugcccGUGcCCCGCg- -3'
miRNA:   3'- -CUCGGGCGCG---CGUUu----CGCcGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 25452 0.66 0.521121
Target:  5'- cGAGCCaaauGCaaaaGCGCAAGGCGGgCCaaaGCa- -3'
miRNA:   3'- -CUCGGg---CG----CGCGUUUCGCC-GGg--CGaa -5'
6425 3' -63.2 NC_001847.1 + 15926 0.66 0.521121
Target:  5'- -cGUCCGUGgGguAGGCGaaGCCCGCc- -3'
miRNA:   3'- cuCGGGCGCgCguUUCGC--CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 92347 0.66 0.521121
Target:  5'- uGGCCaCG-GCaCAGGGCGGCgCCGCg- -3'
miRNA:   3'- cUCGG-GCgCGcGUUUCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 52269 0.66 0.521121
Target:  5'- -uGCUCGCGUGCcc-GCGcGCCgGCUUu -3'
miRNA:   3'- cuCGGGCGCGCGuuuCGC-CGGgCGAA- -5'
6425 3' -63.2 NC_001847.1 + 128265 0.66 0.521121
Target:  5'- cGAGCCaaauGCaaaaGCGCAAGGCGGgCCaaaGCa- -3'
miRNA:   3'- -CUCGGg---CG----CGCGUUUCGCC-GGg--CGaa -5'
6425 3' -63.2 NC_001847.1 + 39771 0.66 0.521121
Target:  5'- aGAGCCgGCG-GC---GCGGUCCGCc- -3'
miRNA:   3'- -CUCGGgCGCgCGuuuCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 55017 0.66 0.521121
Target:  5'- gGAGUCCauGCGCGCGucGGGCGcGUuuGCg- -3'
miRNA:   3'- -CUCGGG--CGCGCGU--UUCGC-CGggCGaa -5'
6425 3' -63.2 NC_001847.1 + 44231 0.66 0.521121
Target:  5'- -cGCCCG-GCuGCugcuAGCGGCCgGCa- -3'
miRNA:   3'- cuCGGGCgCG-CGuu--UCGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 3912 0.66 0.521121
Target:  5'- cAGCgCGgGCGCcgguuGCGcGCCCGCg- -3'
miRNA:   3'- cUCGgGCgCGCGuuu--CGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 125945 0.66 0.521121
Target:  5'- uGGGCCCGCugGCGCccaugagccuAAAGCaaaGCCCGUa- -3'
miRNA:   3'- -CUCGGGCG--CGCG----------UUUCGc--CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 50001 0.66 0.521121
Target:  5'- gGAGCCCGCGCGCccA-CcGCCUGCn- -3'
miRNA:   3'- -CUCGGGCGCGCGuuUcGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 39827 0.66 0.521121
Target:  5'- cGGGCCCGaGCGCuuccugcGUGGCgCGCg- -3'
miRNA:   3'- -CUCGGGCgCGCGuuu----CGCCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 30356 0.66 0.521121
Target:  5'- -uGCCCGgggagGCGCu-GGCGGCgCCGCc- -3'
miRNA:   3'- cuCGGGCg----CGCGuuUCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 28756 0.66 0.521121
Target:  5'- cGGGCCCGgaccUGCAGcuGGCGcGCCUGCUg -3'
miRNA:   3'- -CUCGGGCgc--GCGUU--UCGC-CGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 74985 0.66 0.521121
Target:  5'- -cGCUCGCGgGCGuGGCGcacCCCGCg- -3'
miRNA:   3'- cuCGGGCGCgCGUuUCGCc--GGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.