Results 1 - 20 of 690 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6425 | 3' | -63.2 | NC_001847.1 | + | 58825 | 0.65 | 0.527874 |
Target: 5'- uGGGCCgGUGCG-AGGGUcggcacuugggccgGGCCCGCa- -3' miRNA: 3'- -CUCGGgCGCGCgUUUCG--------------CCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 2381 | 0.66 | 0.524976 |
Target: 5'- -cGCCCGCgaagacggcggugacGCGCucGGCcguGGCUCGCUg -3' miRNA: 3'- cuCGGGCG---------------CGCGuuUCG---CCGGGCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 16394 | 0.66 | 0.524976 |
Target: 5'- -cGCCCGCucgcagcagccGCGCGGGGCGaguguaucucuagucGCCCGUc- -3' miRNA: 3'- cuCGGGCG-----------CGCGUUUCGC---------------CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 55017 | 0.66 | 0.521121 |
Target: 5'- gGAGUCCauGCGCGCGucGGGCGcGUuuGCg- -3' miRNA: 3'- -CUCGGG--CGCGCGU--UUCGC-CGggCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 7356 | 0.66 | 0.521121 |
Target: 5'- uAGCCgucaGCGCGCugcuGcCGGCgCCGCUg -3' miRNA: 3'- cUCGGg---CGCGCGuuu-C-GCCG-GGCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 128265 | 0.66 | 0.521121 |
Target: 5'- cGAGCCaaauGCaaaaGCGCAAGGCGGgCCaaaGCa- -3' miRNA: 3'- -CUCGGg---CG----CGCGUUUCGCC-GGg--CGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 92347 | 0.66 | 0.521121 |
Target: 5'- uGGCCaCG-GCaCAGGGCGGCgCCGCg- -3' miRNA: 3'- cUCGG-GCgCGcGUUUCGCCG-GGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 15926 | 0.66 | 0.521121 |
Target: 5'- -cGUCCGUGgGguAGGCGaaGCCCGCc- -3' miRNA: 3'- cuCGGGCGCgCguUUCGC--CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 25452 | 0.66 | 0.521121 |
Target: 5'- cGAGCCaaauGCaaaaGCGCAAGGCGGgCCaaaGCa- -3' miRNA: 3'- -CUCGGg---CG----CGCGUUUCGCC-GGg--CGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 30911 | 0.66 | 0.521121 |
Target: 5'- uGGGCCCGCGCaccGCGGugcccGUGcCCCGCg- -3' miRNA: 3'- -CUCGGGCGCG---CGUUu----CGCcGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 38251 | 0.66 | 0.521121 |
Target: 5'- cAGuCCCGCGCgaGCAcGGCGGUCC-CUc -3' miRNA: 3'- cUC-GGGCGCG--CGUuUCGCCGGGcGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 39771 | 0.66 | 0.521121 |
Target: 5'- aGAGCCgGCG-GC---GCGGUCCGCc- -3' miRNA: 3'- -CUCGGgCGCgCGuuuCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 74985 | 0.66 | 0.521121 |
Target: 5'- -cGCUCGCGgGCGuGGCGcacCCCGCg- -3' miRNA: 3'- cuCGGGCGCgCGUuUCGCc--GGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 28756 | 0.66 | 0.521121 |
Target: 5'- cGGGCCCGgaccUGCAGcuGGCGcGCCUGCUg -3' miRNA: 3'- -CUCGGGCgc--GCGUU--UCGC-CGGGCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 30356 | 0.66 | 0.521121 |
Target: 5'- -uGCCCGgggagGCGCu-GGCGGCgCCGCc- -3' miRNA: 3'- cuCGGGCg----CGCGuuUCGCCG-GGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 39827 | 0.66 | 0.521121 |
Target: 5'- cGGGCCCGaGCGCuuccugcGUGGCgCGCg- -3' miRNA: 3'- -CUCGGGCgCGCGuuu----CGCCGgGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 50001 | 0.66 | 0.521121 |
Target: 5'- gGAGCCCGCGCGCccA-CcGCCUGCn- -3' miRNA: 3'- -CUCGGGCGCGCGuuUcGcCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 125945 | 0.66 | 0.521121 |
Target: 5'- uGGGCCCGCugGCGCccaugagccuAAAGCaaaGCCCGUa- -3' miRNA: 3'- -CUCGGGCG--CGCG----------UUUCGc--CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 3912 | 0.66 | 0.521121 |
Target: 5'- cAGCgCGgGCGCcgguuGCGcGCCCGCg- -3' miRNA: 3'- cUCGgGCgCGCGuuu--CGC-CGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 44231 | 0.66 | 0.521121 |
Target: 5'- -cGCCCG-GCuGCugcuAGCGGCCgGCa- -3' miRNA: 3'- cuCGGGCgCG-CGuu--UCGCCGGgCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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