miRNA display CGI


Results 41 - 60 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 21747 0.75 0.133432
Target:  5'- cGGCCCGCGCGCGcGGGgGGgCCGCc- -3'
miRNA:   3'- cUCGGGCGCGCGU-UUCgCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 57905 0.75 0.129754
Target:  5'- -cGCCCGCGCGaccgcgcCAAguccgggcccGGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGC-------GUU----------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 86532 0.75 0.130085
Target:  5'- -cGCCCGCGUGCu-GGCGGCgCgGCUUa -3'
miRNA:   3'- cuCGGGCGCGCGuuUCGCCG-GgCGAA- -5'
6425 3' -63.2 NC_001847.1 + 51204 0.75 0.133432
Target:  5'- cGGcCCCGCGCGCAcuucGAGCGGgCCCuGCUc -3'
miRNA:   3'- cUC-GGGCGCGCGU----UUCGCC-GGG-CGAa -5'
6425 3' -63.2 NC_001847.1 + 40967 0.75 0.143955
Target:  5'- -uGCCCGCGCGa--GGCGGCCgCGCc- -3'
miRNA:   3'- cuCGGGCGCGCguuUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 47751 0.75 0.131414
Target:  5'- -cGCCCGCGCGCAAguacuuguccgcgaaGGCGGCCaCGg-- -3'
miRNA:   3'- cuCGGGCGCGCGUU---------------UCGCCGG-GCgaa -5'
6425 3' -63.2 NC_001847.1 + 41890 0.75 0.126815
Target:  5'- cGGCCCGCGCgGCGAGGCagagguggucGGCUCGCg- -3'
miRNA:   3'- cUCGGGCGCG-CGUUUCG----------CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 53178 0.75 0.126815
Target:  5'- -cGCCCGCGUGauGAGCGcGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCguUUCGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 99932 0.75 0.140365
Target:  5'- -cGUCCGCGCGCAGGGCGcccaGCCgCGCg- -3'
miRNA:   3'- cuCGGGCGCGCGUUUCGC----CGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 70969 0.75 0.143955
Target:  5'- -cGCCCGCcgccccguccGCGC-AAGCGGCCUGCa- -3'
miRNA:   3'- cuCGGGCG----------CGCGuUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 51276 0.74 0.16278
Target:  5'- cAGCgCCGCgGCGCGcucggggAAGUGGCCCGCg- -3'
miRNA:   3'- cUCG-GGCG-CGCGU-------UUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 46681 0.74 0.155231
Target:  5'- cGAGCagcaCGCGCGCGcGGUcggGGCCCGCg- -3'
miRNA:   3'- -CUCGg---GCGCGCGUuUCG---CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 45554 0.74 0.168972
Target:  5'- aGAGCCCGCGCacGCAggcggggcuguucaaGAuggugcucacGCGGCCCGCg- -3'
miRNA:   3'- -CUCGGGCGCG--CGU---------------UU----------CGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 105759 0.74 0.147257
Target:  5'- aGGGCCuCGCGCGCGGcagcuccGGCcGCCCGCg- -3'
miRNA:   3'- -CUCGG-GCGCGCGUU-------UCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 84075 0.74 0.154842
Target:  5'- cAGCCCGCGCaCGAacgccucGGUGGCCUGCUc -3'
miRNA:   3'- cUCGGGCGCGcGUU-------UCGCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 106645 0.74 0.155231
Target:  5'- aAGCgCGCGCGCuagcGGCGGCgCCGCg- -3'
miRNA:   3'- cUCGgGCGCGCGuu--UCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 30735 0.74 0.151386
Target:  5'- -uGCgCCGCGCGCuggcccGAGCGGCgCGCUg -3'
miRNA:   3'- cuCG-GGCGCGCGu-----UUCGCCGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 29158 0.74 0.163187
Target:  5'- -cGCCUGCcgcgagGCGCugGAGGCGGCCCGCc- -3'
miRNA:   3'- cuCGGGCG------CGCG--UUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 82122 0.74 0.147628
Target:  5'- aGGCCCGaGCGCGcAGCGGCCgcCGCUg -3'
miRNA:   3'- cUCGGGCgCGCGUuUCGCCGG--GCGAa -5'
6425 3' -63.2 NC_001847.1 + 68847 0.74 0.155231
Target:  5'- aGAGCUCGgGCGCGAggcGGCGGCgUGCg- -3'
miRNA:   3'- -CUCGGGCgCGCGUU---UCGCCGgGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.