miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 128696 0.7 0.50733
Target:  5'- aUGCAGCaaGGGAGGagGAGCgGGgUGcGGGg -3'
miRNA:   3'- -ACGUCG--UCCUCCa-CUCGgUCgAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 30452 0.7 0.517109
Target:  5'- gGCuGCAcGAGGUGGGCCGcuuucugcagcGCUGGGa -3'
miRNA:   3'- aCGuCGUcCUCCACUCGGU-----------CGACUCc -5'
6426 5' -58.4 NC_001847.1 + 32340 0.7 0.526961
Target:  5'- cGCGGCGcGGAGG-GGGCCcAGCccccgcgcgGGGGg -3'
miRNA:   3'- aCGUCGU-CCUCCaCUCGG-UCGa--------CUCC- -5'
6426 5' -58.4 NC_001847.1 + 24738 0.7 0.536883
Target:  5'- cGUaaaGGcCGGGccGUGcAGCCGGCUGAGGu -3'
miRNA:   3'- aCG---UC-GUCCucCAC-UCGGUCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 81230 0.7 0.536883
Target:  5'- gGCGGCAGcGGcGGcGGGCCAGgCUGGGc -3'
miRNA:   3'- aCGUCGUC-CU-CCaCUCGGUC-GACUCc -5'
6426 5' -58.4 NC_001847.1 + 3947 0.7 0.536883
Target:  5'- cGCGGCGGGGGG-GGcGCCgucuccGGCggcGAGGg -3'
miRNA:   3'- aCGUCGUCCUCCaCU-CGG------UCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 5666 0.7 0.546869
Target:  5'- cGCc-CAGGcgcgaAGGUGGGCCGGCcGGGGc -3'
miRNA:   3'- aCGucGUCC-----UCCACUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 108479 0.7 0.546869
Target:  5'- cGCc-CAGGcgcgaAGGUGGGCCGGCcGGGGc -3'
miRNA:   3'- aCGucGUCC-----UCCACUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 8294 0.69 0.555906
Target:  5'- aGCGGCAGGgcuccccGGG-GGGCCAGgCUGucggcAGGa -3'
miRNA:   3'- aCGUCGUCC-------UCCaCUCGGUC-GAC-----UCC- -5'
6426 5' -58.4 NC_001847.1 + 125877 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23064 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 106378 0.69 0.56701
Target:  5'- cUGCAGCAGGc---GcGCCAGCUGcAGGu -3'
miRNA:   3'- -ACGUCGUCCuccaCuCGGUCGAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 125907 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 35012 0.69 0.56701
Target:  5'- gGCcGC-GGAcGUGGGCCAGCUGAcgcGGu -3'
miRNA:   3'- aCGuCGuCCUcCACUCGGUCGACU---CC- -5'
6426 5' -58.4 NC_001847.1 + 132361 0.69 0.56701
Target:  5'- cGCGGCccuGGAGGcc-GCCGGCgGGGGc -3'
miRNA:   3'- aCGUCGu--CCUCCacuCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 3565 0.69 0.56701
Target:  5'- cUGCAGCAGGc---GcGCCAGCUGcAGGu -3'
miRNA:   3'- -ACGUCGUCCuccaCuCGGUCGAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 29548 0.69 0.56701
Target:  5'- cGCGGCccuGGAGGcc-GCCGGCgGGGGc -3'
miRNA:   3'- aCGUCGu--CCUCCacuCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 53830 0.69 0.56701
Target:  5'- cGgAGCGGGGGcGcugaaGAGCCGGCgcgGGGGu -3'
miRNA:   3'- aCgUCGUCCUC-Ca----CUCGGUCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 23094 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 21857 0.69 0.577153
Target:  5'- gUGCAGCAGGuGGUGcGggGGCUGcGGc -3'
miRNA:   3'- -ACGUCGUCCuCCACuCggUCGACuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.