miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 80735 0.67 0.883364
Target:  5'- cCGAGGCCAACcgcggcggcgcCCGCCUCGc- -3'
miRNA:   3'- uGCUCCGGUUGaaaua------GGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 30580 0.67 0.882656
Target:  5'- gACGAGGuCCAggaggaccgccGCguag-CgGCCCCGGGg -3'
miRNA:   3'- -UGCUCC-GGU-----------UGaaauaGgCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 57894 0.67 0.882656
Target:  5'- cCGGGGCgCAA------CCGCCCCGGGc -3'
miRNA:   3'- uGCUCCG-GUUgaaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 114946 0.67 0.882656
Target:  5'- gGCGGGGCgGgGCg----CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGgU-UGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 14204 0.67 0.882656
Target:  5'- gGCGGGGCUGGCg--GUCagGCCggCCGGGg -3'
miRNA:   3'- -UGCUCCGGUUGaaaUAGg-CGG--GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 94415 0.67 0.878361
Target:  5'- gACGGGGCCAugcccgucguggucuGCguggGUUCGCCCaCGcAGa -3'
miRNA:   3'- -UGCUCCGGU---------------UGaaa-UAGGCGGG-GC-UC- -5'
6442 5' -55.2 NC_001847.1 + 102889 0.67 0.875452
Target:  5'- gGCGggcccGGGCCcGCUcUGggcUCCGCCCCuGGGu -3'
miRNA:   3'- -UGC-----UCCGGuUGAaAU---AGGCGGGG-CUC- -5'
6442 5' -55.2 NC_001847.1 + 36327 0.67 0.875452
Target:  5'- cGCGAGGgu-GCguccugCCGCCCCGAu -3'
miRNA:   3'- -UGCUCCgguUGaaaua-GGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 76 0.67 0.875452
Target:  5'- gGCGggcccGGGCCcGCUcUGggcUCCGCCCCuGGGu -3'
miRNA:   3'- -UGC-----UCCGGuUGAaAU---AGGCGGGG-CUC- -5'
6442 5' -55.2 NC_001847.1 + 123559 0.67 0.875452
Target:  5'- aACGGGGCUugGGCcggggCCGCCgCGAGc -3'
miRNA:   3'- -UGCUCCGG--UUGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 89299 0.67 0.875452
Target:  5'- cCGAGGCCucgGCcgUG-CCGCCCagCGAGu -3'
miRNA:   3'- uGCUCCGGu--UGaaAUaGGCGGG--GCUC- -5'
6442 5' -55.2 NC_001847.1 + 91729 0.67 0.868024
Target:  5'- cGCGAGGcCCAGCUgcag-CGCCCUGc- -3'
miRNA:   3'- -UGCUCC-GGUUGAaauagGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 115313 0.67 0.868024
Target:  5'- -aGGGGCUGACUgUGUucuuuuucugCCGCCCCGc- -3'
miRNA:   3'- ugCUCCGGUUGAaAUA----------GGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 59409 0.67 0.867269
Target:  5'- -gGAGGCgCGGCg--GUCaucgcugCGCCCCGGGc -3'
miRNA:   3'- ugCUCCG-GUUGaaaUAG-------GCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 56810 0.67 0.860378
Target:  5'- cACGGGGCCGGCg-----CGCCUgGGGg -3'
miRNA:   3'- -UGCUCCGGUUGaaauagGCGGGgCUC- -5'
6442 5' -55.2 NC_001847.1 + 22813 0.67 0.860378
Target:  5'- uGCG-GGCCGGCggcggCCGCUccccgCCGAGg -3'
miRNA:   3'- -UGCuCCGGUUGaaauaGGCGG-----GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 120312 0.67 0.85252
Target:  5'- uGCGGGGCCGGCUgauuuUCCuggaacaccaGCuCCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGAaau--AGG----------CG-GGGCUc -5'
6442 5' -55.2 NC_001847.1 + 127009 0.67 0.85252
Target:  5'- cGCGAGGCUcgucGGCccgc-CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGG----UUGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 24196 0.67 0.85252
Target:  5'- cGCGAGGCUcgucGGCccgc-CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGG----UUGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 34507 0.67 0.85252
Target:  5'- aGCGAGGCCGACgcggaCgGCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGgCGgGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.