miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 31431 0.67 0.850924
Target:  5'- gGCGGcGGCCGGCggccgcggCgGCCCCGGc -3'
miRNA:   3'- -UGCU-CCGGUUGaaaua---GgCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 31557 0.69 0.763943
Target:  5'- gACGAGGCCGGCg----CCGCCggcggCGGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGGg----GCUC- -5'
6442 5' -55.2 NC_001847.1 + 32832 0.68 0.81911
Target:  5'- cGCGAGGCCcGCg----UgGCCgCCGAGa -3'
miRNA:   3'- -UGCUCCGGuUGaaauaGgCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 33213 0.66 0.909148
Target:  5'- cGCGGguGGCuCGGCUUggcgCCGCgCCGGGc -3'
miRNA:   3'- -UGCU--CCG-GUUGAAaua-GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 34294 0.66 0.896375
Target:  5'- gGCG-GGCCGGCgc--UCCGgCCCUGGc -3'
miRNA:   3'- -UGCuCCGGUUGaaauAGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 34390 0.69 0.773492
Target:  5'- cGCGGGGCgAcCUggaccCCgGCCCCGAGa -3'
miRNA:   3'- -UGCUCCGgUuGAaaua-GG-CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 34453 0.66 0.896375
Target:  5'- gACGAGGCC-GCggUggCCGCCggcggCGAGg -3'
miRNA:   3'- -UGCUCCGGuUGaaAuaGGCGGg----GCUC- -5'
6442 5' -55.2 NC_001847.1 + 34507 0.67 0.85252
Target:  5'- aGCGAGGCCGACgcggaCgGCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGgCGgGGCUc -5'
6442 5' -55.2 NC_001847.1 + 35054 0.75 0.443166
Target:  5'- gACGGGGCUgcuGACgUUcgCCGCCUCGGGa -3'
miRNA:   3'- -UGCUCCGG---UUGaAAuaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35221 0.66 0.915173
Target:  5'- gGCGGGGUCcgUUgcgcCUGCCUCGAGg -3'
miRNA:   3'- -UGCUCCGGuuGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35637 0.7 0.73461
Target:  5'- cUGGGGCCAGCgcUGgaccgcgCCGCCUCGGc -3'
miRNA:   3'- uGCUCCGGUUGaaAUa------GGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 35795 0.66 0.896375
Target:  5'- -aGGGGCCAAg---AUCCGCCCgGc- -3'
miRNA:   3'- ugCUCCGGUUgaaaUAGGCGGGgCuc -5'
6442 5' -55.2 NC_001847.1 + 36327 0.67 0.875452
Target:  5'- cGCGAGGgu-GCguccugCCGCCCCGAu -3'
miRNA:   3'- -UGCUCCgguUGaaaua-GGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 36974 0.68 0.817362
Target:  5'- cGCGGGcGCCGGCgagcgggcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua---GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 38141 0.68 0.844458
Target:  5'- cCGAGucuucGCgCGGCgcg--CCGCCCCGAGg -3'
miRNA:   3'- uGCUC-----CG-GUUGaaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 39123 0.69 0.801326
Target:  5'- cGCGGcGGCCGACgcg--CCGCgCUGGGg -3'
miRNA:   3'- -UGCU-CCGGUUGaaauaGGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 40973 0.67 0.886869
Target:  5'- cGCGAGGCgGccGCgcccagcagCCGCCgCGAGa -3'
miRNA:   3'- -UGCUCCGgU--UGaaaua----GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 41597 0.71 0.694265
Target:  5'- uCGAGGCCAGCguggcgUUGuUCUGCUCCGc- -3'
miRNA:   3'- uGCUCCGGUUGa-----AAU-AGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 44197 0.66 0.902882
Target:  5'- uCGAGaGCCAGCUggugUUGCCCCa-- -3'
miRNA:   3'- uGCUC-CGGUUGAaauaGGCGGGGcuc -5'
6442 5' -55.2 NC_001847.1 + 45506 0.69 0.792193
Target:  5'- cCGGGGCgGGCg----CCGCCgCCGGGc -3'
miRNA:   3'- uGCUCCGgUUGaaauaGGCGG-GGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.