miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 18516 0.69 0.761054
Target:  5'- cCGAGGCCAGCgcUgcgggcgcgccgccGUCCGCgCCGcAGa -3'
miRNA:   3'- uGCUCCGGUUGaaA--------------UAGGCGgGGC-UC- -5'
6442 5' -55.2 NC_001847.1 + 18701 0.69 0.773492
Target:  5'- cGCGuGcGCCAGCgcccaCCGCCCuCGAGc -3'
miRNA:   3'- -UGCuC-CGGUUGaaauaGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 20090 0.79 0.257361
Target:  5'- gGCGAGcGCCAGCUggagcUCUGCCCCGGa -3'
miRNA:   3'- -UGCUC-CGGUUGAaau--AGGCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 20299 0.69 0.754273
Target:  5'- gGCGuuuGGUCAuuuGCUUUGUgaCCGCgCCGAGg -3'
miRNA:   3'- -UGCu--CCGGU---UGAAAUA--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 21077 0.72 0.629212
Target:  5'- gGCGGGGcCCGACUguccccUUccccccucccccccGUCCGCCCgCGAGu -3'
miRNA:   3'- -UGCUCC-GGUUGA------AA--------------UAGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 21625 0.71 0.673734
Target:  5'- gGCGcuuGGCCGGCgcgggCCGCgCCCGGGc -3'
miRNA:   3'- -UGCu--CCGGUUGaaauaGGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 22813 0.67 0.860378
Target:  5'- uGCG-GGCCGGCggcggCCGCUccccgCCGAGg -3'
miRNA:   3'- -UGCuCCGGUUGaaauaGGCGG-----GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 23806 0.66 0.915173
Target:  5'- cGCGGcGGCCAccgaccacuGCUcgcgGUCCagcgcgcgcacgGCCCCGAGc -3'
miRNA:   3'- -UGCU-CCGGU---------UGAaa--UAGG------------CGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 24196 0.67 0.85252
Target:  5'- cGCGAGGCUcgucGGCccgc-CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGG----UUGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 26521 0.67 0.89168
Target:  5'- cGCGGGGCCGggggcguucggccauGCUUUcaugcaaAUgaGCCCCGAc -3'
miRNA:   3'- -UGCUCCGGU---------------UGAAA-------UAggCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 27703 0.71 0.694265
Target:  5'- cGCGAGcGCCGGCgggccgcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 27924 0.68 0.81911
Target:  5'- -gGAGGCCAggGCgg---CCGUCUCGAGu -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 28123 0.73 0.529833
Target:  5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3'
miRNA:   3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 28575 0.72 0.611584
Target:  5'- cGCGAgGGCCu-CUggGaCUGCCCCGAGa -3'
miRNA:   3'- -UGCU-CCGGuuGAaaUaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 28634 0.68 0.827745
Target:  5'- cGCGGGGCCcGCggccgUGUUCGUgCCGGa -3'
miRNA:   3'- -UGCUCCGGuUGaa---AUAGGCGgGGCUc -5'
6442 5' -55.2 NC_001847.1 + 29891 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 30117 0.74 0.479811
Target:  5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3'
miRNA:   3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 30580 0.67 0.882656
Target:  5'- gACGAGGuCCAggaggaccgccGCguag-CgGCCCCGGGg -3'
miRNA:   3'- -UGCUCC-GGU-----------UGaaauaGgCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 30821 0.66 0.896375
Target:  5'- cCGAGGCCGccuacGCgcggcUCUaCCCCGAGg -3'
miRNA:   3'- uGCUCCGGU-----UGaaau-AGGcGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 31223 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.