miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 46193 0.7 0.73461
Target:  5'- cGCGGuagcGGCCGGCggcggCCGCCgCCGGGc -3'
miRNA:   3'- -UGCU----CCGGUUGaaauaGGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 105729 0.7 0.714582
Target:  5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 103574 0.72 0.62195
Target:  5'- gGCGAGGCCGGC-----CCGCCgCCGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCGG-GGCUc -5'
6442 5' -55.2 NC_001847.1 + 101060 0.74 0.500147
Target:  5'- cCGAGGCCGGCcccggggCCGCCgCGGGg -3'
miRNA:   3'- uGCUCCGGUUGaaaua--GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 36974 0.68 0.817362
Target:  5'- cGCGGGcGCCGGCgagcgggcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua---GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 18701 0.69 0.773492
Target:  5'- cGCGuGcGCCAGCgcccaCCGCCCuCGAGc -3'
miRNA:   3'- -UGCuC-CGGUUGaaauaGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 130516 0.71 0.694265
Target:  5'- cGCGAGcGCCGGCgggccgcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 132930 0.74 0.479811
Target:  5'- cGCGGcgcuggcGGCCuACUg---CCGCCCCGAGg -3'
miRNA:   3'- -UGCU-------CCGGuUGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 11403 0.69 0.773492
Target:  5'- -aGAGGCCAugUUgcggcccCCGUCgCCGAGc -3'
miRNA:   3'- ugCUCCGGUugAAaua----GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35054 0.75 0.443166
Target:  5'- gACGGGGCUgcuGACgUUcgCCGCCUCGGGa -3'
miRNA:   3'- -UGCUCCGG---UUGaAAuaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 112760 0.7 0.704455
Target:  5'- cCGcGGCCcgGGCgcu-UCUGCCCCGAGg -3'
miRNA:   3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 64063 0.69 0.754273
Target:  5'- gACGcccuGGCCGGCcgccucgCCGCCCuCGAGg -3'
miRNA:   3'- -UGCu---CCGGUUGaaaua--GGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 80035 0.71 0.684021
Target:  5'- -gGGGGUCGGCgucaucgCCGCCgCCGAGg -3'
miRNA:   3'- ugCUCCGGUUGaaaua--GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 123890 0.72 0.629212
Target:  5'- gGCGGGGcCCGACUguccccUUccccccucccccccGUCCGCCCgCGAGu -3'
miRNA:   3'- -UGCUCC-GGUUGA------AA--------------UAGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 585 0.72 0.620913
Target:  5'- gACGAGGCCGuCUUugUGUCCugcccgacgacgcGCCCCGuGu -3'
miRNA:   3'- -UGCUCCGGUuGAA--AUAGG-------------CGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 130936 0.73 0.529833
Target:  5'- cCGAGGCCGGCgacGUUgGgCCCGAGg -3'
miRNA:   3'- uGCUCCGGUUGaaaUAGgCgGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 54402 0.68 0.81911
Target:  5'- gGCGAGGCgGGCg----CCGCCgCGGu -3'
miRNA:   3'- -UGCUCCGgUUGaaauaGGCGGgGCUc -5'
6442 5' -55.2 NC_001847.1 + 27924 0.68 0.81911
Target:  5'- -gGAGGCCAggGCgg---CCGUCUCGAGu -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 106849 0.69 0.792193
Target:  5'- cGCGGGGCC-GCUUUGguUCUGgUCCCGGc -3'
miRNA:   3'- -UGCUCCGGuUGAAAU--AGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 10393 0.69 0.782912
Target:  5'- gGCGGGGCC-GCUUUAUgacggcCCGUCCCc-- -3'
miRNA:   3'- -UGCUCCGGuUGAAAUA------GGCGGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.