miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 3573 0.66 0.909148
Target:  5'- gGCGc-GCCAGCUgcagGUCCggGCCCgCGAGc -3'
miRNA:   3'- -UGCucCGGUUGAaa--UAGG--CGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 80662 0.66 0.909148
Target:  5'- gGCGccGCCGucgUUGUCCGUCCCGc- -3'
miRNA:   3'- -UGCucCGGUugaAAUAGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 29891 0.66 0.913987
Target:  5'- gGCGAGGCggCGGCccugccggCCGCCgCGGGg -3'
miRNA:   3'- -UGCUCCG--GUUGaaaua---GGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35221 0.66 0.915173
Target:  5'- gGCGGGGUCcgUUgcgcCUGCCUCGAGg -3'
miRNA:   3'- -UGCUCCGGuuGAaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 31223 0.66 0.920953
Target:  5'- -gGAGGCCGcgGCggcg-CCGCCCgCGGc -3'
miRNA:   3'- ugCUCCGGU--UGaaauaGGCGGG-GCUc -5'
6442 5' -55.2 NC_001847.1 + 86987 0.66 0.920953
Target:  5'- gGCcGGGCCGGCgcgcgCCGgCCCGGc -3'
miRNA:   3'- -UGcUCCGGUUGaaauaGGCgGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 34294 0.66 0.896375
Target:  5'- gGCG-GGCCGGCgc--UCCGgCCCUGGc -3'
miRNA:   3'- -UGCuCCGGUUGaaauAGGC-GGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 123505 0.66 0.920953
Target:  5'- aGCGGGGCCGggGCcagggCUGCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 35795 0.66 0.896375
Target:  5'- -aGGGGCCAAg---AUCCGCCCgGc- -3'
miRNA:   3'- ugCUCCGGUUgaaaUAGGCGGGgCuc -5'
6442 5' -55.2 NC_001847.1 + 30821 0.66 0.896375
Target:  5'- cCGAGGCCGccuacGCgcggcUCUaCCCCGAGg -3'
miRNA:   3'- uGCUCCGGU-----UGaaau-AGGcGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 80581 0.67 0.889632
Target:  5'- cGCGGGGCCGucguccuccGCg----CCGCCCCc-- -3'
miRNA:   3'- -UGCUCCGGU---------UGaaauaGGCGGGGcuc -5'
6442 5' -55.2 NC_001847.1 + 26521 0.67 0.89168
Target:  5'- cGCGGGGCCGggggcguucggccauGCUUUcaugcaaAUgaGCCCCGAc -3'
miRNA:   3'- -UGCUCCGGU---------------UGAAA-------UAggCGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 76 0.67 0.875452
Target:  5'- gGCGggcccGGGCCcGCUcUGggcUCCGCCCCuGGGu -3'
miRNA:   3'- -UGC-----UCCGGuUGAaAU---AGGCGGGG-CUC- -5'
6442 5' -55.2 NC_001847.1 + 123559 0.67 0.875452
Target:  5'- aACGGGGCUugGGCcggggCCGCCgCGAGc -3'
miRNA:   3'- -UGCUCCGG--UUGaaauaGGCGGgGCUC- -5'
6442 5' -55.2 NC_001847.1 + 89299 0.67 0.875452
Target:  5'- cCGAGGCCucgGCcgUG-CCGCCCagCGAGu -3'
miRNA:   3'- uGCUCCGGu--UGaaAUaGGCGGG--GCUC- -5'
6442 5' -55.2 NC_001847.1 + 115313 0.67 0.868024
Target:  5'- -aGGGGCUGACUgUGUucuuuuucugCCGCCCCGc- -3'
miRNA:   3'- ugCUCCGGUUGAaAUA----------GGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 57894 0.67 0.882656
Target:  5'- cCGGGGCgCAA------CCGCCCCGGGc -3'
miRNA:   3'- uGCUCCG-GUUgaaauaGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 56810 0.67 0.860378
Target:  5'- cACGGGGCCGGCg-----CGCCUgGGGg -3'
miRNA:   3'- -UGCUCCGGUUGaaauagGCGGGgCUC- -5'
6442 5' -55.2 NC_001847.1 + 114946 0.67 0.882656
Target:  5'- gGCGGGGCgGgGCg----CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGgU-UGaaauaGGCGGGGCuC- -5'
6442 5' -55.2 NC_001847.1 + 24196 0.67 0.85252
Target:  5'- cGCGAGGCUcgucGGCccgc-CCGCCCCGcGg -3'
miRNA:   3'- -UGCUCCGG----UUGaaauaGGCGGGGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.