miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 5' -55.2 NC_001847.1 + 3997 0.72 0.62195
Target:  5'- aGCGcGGCCAAgUUaacaGUCCGCCCCccGAGc -3'
miRNA:   3'- -UGCuCCGGUUgAAa---UAGGCGGGG--CUC- -5'
6442 5' -55.2 NC_001847.1 + 76781 0.72 0.62195
Target:  5'- uACGAGGCCGACguc--CCGCgCCUGGc -3'
miRNA:   3'- -UGCUCCGGUUGaaauaGGCG-GGGCUc -5'
6442 5' -55.2 NC_001847.1 + 21077 0.72 0.629212
Target:  5'- gGCGGGGcCCGACUguccccUUccccccucccccccGUCCGCCCgCGAGu -3'
miRNA:   3'- -UGCUCC-GGUUGA------AA--------------UAGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 123890 0.72 0.629212
Target:  5'- gGCGGGGcCCGACUguccccUUccccccucccccccGUCCGCCCgCGAGu -3'
miRNA:   3'- -UGCUCC-GGUUGA------AA--------------UAGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 134220 0.71 0.639587
Target:  5'- cCGAGGgCGGCggugggaaggccggGUCCGCCUCGAGc -3'
miRNA:   3'- uGCUCCgGUUGaaa-----------UAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 111543 0.71 0.668577
Target:  5'- cCGAGGCCcagccccggcaaaGGCaagguaagcgcAUCCGCCCCGGGg -3'
miRNA:   3'- uGCUCCGG-------------UUGaaa--------UAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 8730 0.71 0.668577
Target:  5'- cCGAGGCCcagccccggcaaaGGCaagguaagcgcAUCCGCCCCGGGg -3'
miRNA:   3'- uGCUCCGG-------------UUGaaa--------UAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 124438 0.71 0.673734
Target:  5'- gGCGcuuGGCCGGCgcgggCCGCgCCCGGGc -3'
miRNA:   3'- -UGCu--CCGGUUGaaauaGGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 21625 0.71 0.673734
Target:  5'- gGCGcuuGGCCGGCgcgggCCGCgCCCGGGc -3'
miRNA:   3'- -UGCu--CCGGUUGaaauaGGCG-GGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 9947 0.71 0.684021
Target:  5'- cCGcGGCCcgGGCgccuUCUGCCCCGAGg -3'
miRNA:   3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 80035 0.71 0.684021
Target:  5'- -gGGGGUCGGCgucaucgCCGCCgCCGAGg -3'
miRNA:   3'- ugCUCCGGUUGaaaua--GGCGG-GGCUC- -5'
6442 5' -55.2 NC_001847.1 + 41597 0.71 0.694265
Target:  5'- uCGAGGCCAGCguggcgUUGuUCUGCUCCGc- -3'
miRNA:   3'- uGCUCCGGUUGa-----AAU-AGGCGGGGCuc -5'
6442 5' -55.2 NC_001847.1 + 6960 0.71 0.694265
Target:  5'- cGCGGGGUCGcgGCggcgcuUCCGCCCgCGGGc -3'
miRNA:   3'- -UGCUCCGGU--UGaaau--AGGCGGG-GCUC- -5'
6442 5' -55.2 NC_001847.1 + 130516 0.71 0.694265
Target:  5'- cGCGAGcGCCGGCgggccgcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 27703 0.71 0.694265
Target:  5'- cGCGAGcGCCGGCgggccgcCCGCgCCGAGc -3'
miRNA:   3'- -UGCUC-CGGUUGaaaua--GGCGgGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 112760 0.7 0.704455
Target:  5'- cCGcGGCCcgGGCgcu-UCUGCCCCGAGg -3'
miRNA:   3'- uGCuCCGG--UUGaaauAGGCGGGGCUC- -5'
6442 5' -55.2 NC_001847.1 + 2916 0.7 0.714582
Target:  5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 105729 0.7 0.714582
Target:  5'- aGCGGGGCC-ACg--GUCCGCgCCGc- -3'
miRNA:   3'- -UGCUCCGGuUGaaaUAGGCGgGGCuc -5'
6442 5' -55.2 NC_001847.1 + 88427 0.7 0.721629
Target:  5'- uGCGGGGUCucGCUUUAUUCggcgugggccgcggGCCCCGAc -3'
miRNA:   3'- -UGCUCCGGu-UGAAAUAGG--------------CGGGGCUc -5'
6442 5' -55.2 NC_001847.1 + 61106 0.7 0.73461
Target:  5'- -gGAGGCCAGCgccacGUCCGCCagCGGc -3'
miRNA:   3'- ugCUCCGGUUGaaa--UAGGCGGg-GCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.